KEGG   Rattus norvegicus (rat): 304423
Entry
304423            CDS       T01003                                 
Symbol
Tyw1
Name
(RefSeq) tRNA wybutosine-synthesizing protein 1 homolog
  KO
K15449  tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    304423 (Tyw1)
Enzymes [BR:rno01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.3  Oxo-acid-lyases
    4.1.3.44  tRNA 4-demethylwyosine synthase (AdoMet-dependent)
     304423 (Tyw1)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    304423 (Tyw1)
SSDB
Motif
Pfam: Flavodoxin_1 Wyosine_form Radical_SAM Hydrolase
Other DBs
NCBI-GeneID: 304423
NCBI-ProteinID: NP_001100607
RGD: 1310420
Ensembl: ENSRNOG00000024352
UniProt: A6J0M1 F7FB90
Position
12:complement(31968198..32054454)
AA seq 724 aa
MGPPLDVWDFSSPLLSLWMNRFYIYMGCALGVTLWFCVQIIIKKQVTRSQEKSVPGAPDS
SLSPQEKHTHVSGVKIFYGSQTGTAKGFAVVLAKAVTSLDLPVAIINLKEYDPDDNLIGE
ITSKNVCAFLVATYTDGRPTESAEWFCKWLEEAANDFRFGKTYLKGLRYAVFGLGDSAYR
SHFNKVSTNVDKWLWMLGAQRVLTRGEGDCNAVQSKHGSIEADFTAWKTKFISRLQALQR
GEKKGCGGDCKRGKCESAQHGPGEVRSHPHGELHPGDAEEEEPCESSSEDEHGTKGYQSL
NSVVDVEDLGNIMNPVKREKREKAQPEEKVVVHRNSEKNEDSEARAMITPALREALTKQG
YQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMEATPSLACANKCVFCWRHHT
NPVGTEWRWKMDQPELILKEAIENHRNMIKQFKGVPGLKAERFEEGMEVKHCALSLVGEP
IMYPEINRLLKLLHQHGISTFLVTNAQFPEEIRNLTPVTQLYVSVDASTKDSLKKIDRPL
FKDFWQRFLDSLQALSAKQQRTVYRLTLVKCWNVDELQAYAELVSLGSPDFIEVKGVTYC
GESAASSLTMANVPWHEEVVRFVRELVDLLPDYEIACEHEHSNCLLIGHKKFKIGGEWWT
WIDYSRFQELVLQYEESGGSKTFSSKDYMARTPQWALFGARERGFDPKDTRYQRKNKTKD
ISGC
NT seq 2175 nt   +upstreamnt  +downstreamnt
atgggtcctcctctggatgtgtgggacttctcgtcacctttgctgtccctatggatgaac
aggttctacatatatatgggctgtgccctgggagttacgctttggttctgtgtccagatc
atcatcaagaagcaggtcactcgttcccaggagaagagtgtcccaggagctcctgatagc
tccctctcccctcaggagaagcatacacacgtgtctggagtgaagattttctacggatca
cagacgggcactgccaagggattcgcagtggttcttgccaaagctgtcacctctctggac
ctgcctgtggccattattaatctgaaggagtatgatccagatgacaacctgataggagag
atcactagtaaaaacgtctgtgcctttctggttgctacgtacacggacggccgccctacg
gagagcgcagagtggttctgcaagtggttagaggaagcggccaatgatttccgctttggc
aaaacgtacctgaaaggacttcgatatgcagtgtttggcctgggagactctgcctaccgg
agccacttcaacaaggtcagcacgaacgtcgacaaatggctctggatgcttggtgcccag
cgagtgctgacccgaggggagggcgactgcaatgcagttcagagcaaacatggcagcatc
gaggccgacttcacagcctggaagaccaagttcatctcccggctgcaggccctacagaga
ggggagaaaaagggctgtggtggggactgcaagagagggaagtgtgagtcggcgcagcat
ggcccaggagaggtgcggtctcacccacacggcgaattgcatcctggggatgctgaggag
gaagagccctgtgagagcagcagcgaggacgagcacgggaccaagggttatcagagcctg
aattctgtggttgatgtcgaggacctgggcaacatcatgaaccccgtgaagagggaaaag
agagaaaaggctcaaccggaggagaaagttgtcgtgcacaggaactcagagaagaatgaa
gacagcgaagcgagagctatgattacgcctgctctgcgggaggccctaactaaacaaggg
taccagttgattggcagccactccggtgtgaagctttgcaggtggaccaagtccatgctg
cgggggcgaggaggttgctacaagcacacattctacggcatcgagagccatcgctgcatg
gaggccaccccgagcttggcatgtgcgaacaagtgtgtcttctgctggcggcaccatacg
aatcctgtgggcacggagtggcggtggaagatggaccagccggaattgatcttgaaggaa
gccattgagaaccatcggaacatgattaaacagttcaaaggcgtgccagggctcaaggcc
gagcgcttcgaagaggggatggaggtcaagcactgtgcgctgtcactcgtgggtgagcca
ataatgtacccagagatcaacaggcttttgaagctgctccaccagcacgggatctccact
ttccttgtcaccaatgcacagttccctgaggaaatcaggaacctcacaccagttactcag
ctctatgtaagtgtggacgccagcaccaaagacagcctgaagaagatcgaccgcccgctc
ttcaaggatttctggcagcgattcctagacagtttgcaagccttatctgcaaagcaacag
cgaaccgtctacagactgacacttgtgaagtgttggaacgtggacgagctccaggcctac
gccgagctggtgtctttggggagccccgacttcatcgaggtcaagggcgtgacctactgc
ggtgagagtgcagccagcagcctcaccatggccaacgtcccttggcacgaggaagttgtc
cggtttgtccgtgagctggtggatctgcttcctgactatgaaattgcgtgtgaacatgaa
cactccaactgcctcctgattggacacaagaagtttaagatcggcggagagtggtggacg
tggatcgattacagccgcttccaggagctcgtcctgcagtacgaagagagcggaggctca
aagacgttcagctcgaaggattacatggccagaaccccacagtgggccctgtttggtgcc
agggaaagaggctttgatcccaaggacacgagataccagaggaagaacaagacgaaggac
atttccggttgttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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