KEGG   Rattus norvegicus (rat): 304528
Entry
304528            CDS       T01003                                 
Symbol
Rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03030  DNA replication
rno03410  Base excision repair
rno03420  Nucleotide excision repair
rno03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    304528 (Rfc5)
   03410 Base excision repair
    304528 (Rfc5)
   03420 Nucleotide excision repair
    304528 (Rfc5)
   03430 Mismatch repair
    304528 (Rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rno03032]
    304528 (Rfc5)
   03036 Chromosome and associated proteins [BR:rno03036]
    304528 (Rfc5)
   03400 DNA repair and recombination proteins [BR:rno03400]
    304528 (Rfc5)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    304528 (Rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    304528 (Rfc5)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    304528 (Rfc5)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     304528 (Rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    304528 (Rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_24 AAA_16 AAA_11 AAA_22 AAA_assoc_2 RuvB_N DEAD DUF815 AAA_14 ResIII DNA_pol3_delta AAA_5 AAA_19 ATPase_2 TniB PhoH TIP49 AAA_30 AAA_7 nSTAND3 bpMoxR Mg_chelatase T2SSE AAA_25 Thioredoxin_6 AAA_3 AAA_18
Other DBs
NCBI-GeneID: 304528
NCBI-ProteinID: NP_001100616
RGD: 1309280
Ensembl: ENSRNOG00000001134
Vega: OTTRNOG00000001293
UniProt: A0A9K3Y789 B5DF29
Position
12:44868322..44877879
AA seq 338 aa
MAAAPSQQQPRAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPP
GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRGFKLV
ILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELM
VPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHP
LKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLL
TKMADIEYRLSVGTSEKIQLSSLIAAFQVTRDLIVAEA
NT seq 1017 nt   +upstreamnt  +downstreamnt
atggcggcggcgccttcgcagcagcagccccgggcggcccgggcccggaacctgccctgg
gttgagaagtaccggccacagactctggccgatctcatatctcaccaggacatcctgagt
accattcagaagttcatcagtgaagaccgcttgccacacctacttctctatggccctcca
ggcacaggaaagacatccaccattctggcctgtgccaagcaactgtacaaagataaagaa
ttcggctccatggtcttggagctgaatgcttccgacgaccgagggatcgatattgtccgg
gggccaatcctcagctttgccagcacaaggacaatcttcaagagagggtttaagcttgtg
atcctggacgaagctgacgccatgactcaagatgcccagaatgccttgagacgagtgatt
gagaagttcactgaaaacaccaggttttgcctcatctgtaactacctgtccaagatcatc
cctgccttgcagtcacggtgcacgaggttccgatttggccctctgacgcctgagctcatg
gttcctcggctagaacatgtggtacaagaagagaacgtggacataagtgaagatggaatg
aaggcccttgtcactctgtccagtggggacatgcgaagggctttgaacattctgcagagt
accaatatggcctttgggaaggtgacagaggagactgtctacacctgcaccgggcaccca
ctcaagacggatattgccaatattctagactggatgctgaatcaagacttcaccactgcc
tacaaaaatatcatggagctgaagactctgaagggcttggcactgcacgacatcttgaca
gaggttcacttgtttgtgcacagagttgactttccgtcttcagttcggatgcatttattg
accaaaatggcagacattgagtacaggctctctgtcggcaccagtgagaagatccagctg
agctccctcattgctgcttttcaagttaccagggacttgatagttgcagaggcctag

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