KEGG   Rattus norvegicus (rat): 304579
Entry
304579            CDS       T01003                                 
Symbol
Usp30
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 30
  KO
K11851  ubiquitin carboxyl-terminal hydrolase 30 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    304579 (Usp30)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    304579 (Usp30)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    304579 (Usp30)
   04121 Ubiquitin system [BR:rno04121]
    304579 (Usp30)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     304579 (Usp30)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   304579 (Usp30)
Membrane trafficking [BR:rno04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    304579 (Usp30)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    304579 (Usp30)
SSDB
Motif
Pfam: UCH UCH_1 DUF5700
Other DBs
NCBI-GeneID: 304579
NCBI-ProteinID: NP_001100623
RGD: 1307949
Ensembl: ENSRNOG00000028556
UniProt: D3ZPG5
Position
12:complement(48161905..48215878)
AA seq 517 aa
MLSSRAQAARTAADKALQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFVKWLEEFTTQYSRDQQGPHTHQCLSLTL
LSLLKALSCQEVTEEEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
PRVTHLFDVHSLEQQSEMAPRQVTCHTRGSPHPTTNPWKSQHPFHGRLSSNMVCKHCEHQ
SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTQNGEK
VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSQGTPLKRHEHVQFNEFLMMDFYKYRLLG
HKPSQHGPKATESPGSALGVQDTQAAPKPGLSQPAAPKTQFFMNGACSPSLLPALPSPMA
FPLPVAPDYSSSMYLFRLMAVVVHHGDMHSGHFVTYRRSPPSAKNPLSTSNQWLWISDDT
VRKASLQEVLSSSAYLLFYERVLSRVQQQGREYRSEE
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgctgagttcccgggcgcaggcggcgaggacagcggccgacaaggccctccagcgcttc
ctgcgcaccggggcggctgtcagatacaaagtcatgaagaactggggagtgatcggtgga
attgctgctgctcttgcagcaggaatatatgttatctggggtcccattacagagaggaag
aagcggagaaaagggcttgtgcctggccttgtcaacttggggaacacctgcttcatgaac
tccctgctgcagggtttgtctgcctgccccgcgtttgtcaagtggctggaggagtttacc
acccagtactccagggaccagcaggggccgcacacacaccagtgcctgtccttgacactg
ctgagcctcctgaaagctctgtcctgccaagaagtcactgaggaagaggtcttggacgcc
agctgcctgctggacgtcctgagaatgtaccggtggcagatctcgtcctttgaggagcag
gatgctcacgaactgttccatgtcatcacctcatccctggaggacgagcgggaccgccag
cctcgggtcacccacttgtttgatgtgcactccctggagcagcagtcagaaatggctccc
agacaagtcacctgccacacgagagggtcccctcaccccacgaccaatccctggaagtct
cagcaccccttccatgggaggctcagcagtaacatggtgtgcaagcactgtgagcaccag
agccctgttcggtttgacacctttgatagcctttccctcagtattccagctgctacttgg
gggcacccactgacactggaccactgccttcaccacttcatctcatccgagtcggtgcga
gacgttgtgtgtgacaactgtacaaagattgaagcaaaagggacccagaacggggaaaag
gtggagcaccagaggaccactttcgttaaacagttaaagctaggaaagctgccacagtgc
ctctgcatccacctgcagcggctcagctggtccagccaaggcacgcccttgaagcggcat
gagcacgtgcaatttaacgagttcctgatgatggacttctacaagtaccgcctcctggga
cataaacccagccagcatggccccaaagccactgagagcccagggtctgccctgggagta
caggacacacaggcggccccgaagccaggtctgagtcagccagcggcccccaagacacag
ttttttatgaatggcgcctgctccccgtctttgttgccagccctgccttctccgatggct
ttccctctaccagtggctcctgactacagctcctccatgtacctcttccgcttgatggca
gttgtcgtccaccatggagacatgcactctggacactttgtcacctacagacggtcacca
ccttctgccaagaaccctctctcaaccagcaaccagtggctgtggatttccgatgacact
gtccgaaaggccagcctgcaggaggtcctgtcctctagtgcctacctgctgttctatgag
cgagttctgtccagggtgcagcagcaggggcgagagtacaggtcagaggagtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (3)   
   Pfam (3)   
All databases (35)   

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