KEGG   Rattus norvegicus (rat): 304913
Entry
304913            CDS       T01003                                 
Symbol
Tnn
Name
(RefSeq) tenascin-N precursor
  KO
K06252  tenascin
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04151  PI3K-Akt signaling pathway
rno04510  Focal adhesion
rno04512  ECM-receptor interaction
rno05165  Human papillomavirus infection
rno05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    304913 (Tnn)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    304913 (Tnn)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    304913 (Tnn)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    304913 (Tnn)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    304913 (Tnn)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    304913 (Tnn)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   304913 (Tnn)
SSDB
Motif
Pfam: fn3 Fibrinogen_C DUF4998 Pur_ac_phosph_N EGF_2 DUF4959 EGF_Tenascin Wtap
Other DBs
NCBI-GeneID: 304913
NCBI-ProteinID: NP_001100659
RGD: 1306002
Ensembl: ENSRNOG00000002548
Vega: OTTRNOG00000000167
UniProt: D3ZK14
Position
13:complement(74852586..74919789)
AA seq 1562 aa
MGLWGMLAFPLGFLLASALLVASAPANPETPGCSHKDQQVTVSHTYKIDVPKSALVQVET
DPQSLSDDGTSLLVPGEDGEEQNIIFRHNIRLQTPQKNCELADSVQDLLARVKKLEEEMA
ELKEQCSTSRCCQGAADLSRHCSGHGTFFAETCSCHCDQGWEGADCEQPTCPGACSGHGR
CVDGQCVCDQPYVGVDCAYAACPQDCSGHGVCVRGVCQCHKDFTAEDCSEQRCPGDCSGN
GFCDTGECYCEMGFTGPDCSQVVAPQGLQLLKSTENSLLVSWEPSSEVDHYLLSYYPLGK
EQATKQVRVPKEQHTYDITGLLPGTKYIVTLRNVKKDISSSPQHLLATTDLAVVGTAWVN
EETETSLDVEWENPLTEVDYYKLRYGPLTGQEVTEVTVPKSRDPKSRYDITGLQPGTEYK
ITVVPIRGDLEGKPILLNGRTEIDGPTNVVTNQVTEDTASVSWDPVRADIDKYVVRYISH
DGETKEKAVPKDQSSTVLTGLKPGEAYKVFVWAERGNQGSKKADTKALTEIDSPENLVTD
RVTENSLSVSWDPVEAEIDRYVVSYTSVDGETKQVPVRKDQSSTVLTGLSPGVEYKVYVW
AEKGDRESKKANTKAPTDIDSPKNLVTDQVTENTLSVSWDPVQANIDRYMVSYTSADGET
REVPVPKEKSSTVLTGLRPGMEYKVHVWAQKGTQESRKANTKAPTDIDGPKNLVTDQVTE
TTLSVSWDPVEADIDRYMVRYTSPDGETKEVPVSKDKSSTVLRGLRPGVEYKVDVWAQKG
AQDSRKANTKAPTDIDSPKNLVTEQVTESTATVSWDPVEADIDRYVVRYTSVDGETREFL
VGKDQTSTILTGMKPGVEYQVDVWAQKGTRESRKTSTKAPTDIDGPKNLVTDQVTETTLS
VSWDPVEADIDRYMVRYTSPDGETKEVPVSKDKSSTVLRGLRPGVEYKVDVWAQKGAQDS
RKANTKAPTDIDSPKNLAINQVTETTLSVSWDPVQADIDRYVVRYTSADGESKEFLIGKE
QRSTVLTGLRPGVEYKVEVWAQKGARESKKANTKGHTDIDSPKNLVTNQVTENTATISWD
PVQADIDRYMVRYTSADGETREVPVRKEKSSTVLTGLRPGVEYTVQVWAQKGARESRKAK
TKAPTEIDSPKNLVTNRVTENTATISWDPVRATIDRYMVRYTSADGETKEVPVSKDQSST
ILTGLKPGMEYTIHVWAQKGARESKKADTKALTEIDPPKNFRPFGVTHSSGVLTWMPPSA
QIDGYILTYQLPNGILKEVELQRGQQRFELQDLEQGVTYPVSLVAFKGNQRSRSVSTTLS
TVDARFPHPSDCSQVQQNTNAAASGLYTIYLNGDASRPMQVYCDMDTDGGGWIVFQRRNT
GQLDFFKRWRSYVEGFGDPMKEFWLGLDKLHNLTTGTTTRYEVRADLQTANESAYAVYDF
FQVASSKERYKLSVGKYRGTAGDALTYHNGWKFTTFDRDNDIALSNCALTHHGGWWYKNC
HLANPNGKYGETKHSEGVNWEPWKGHEFSIPYVELKIRPFGYSRDRFSGRKKRSIGGKAR
VF
NT seq 4689 nt   +upstreamnt  +downstreamnt
atgggtctgtgggggatgcttgccttccccctgggattcctgcttgcttctgcgctcctg
gtggcttcagccccagccaacccagagactcctggctgcagccacaaagaccaacaggtc
accgttagccacacctacaagattgatgtgcccaagtctgctctggttcaagtagagacg
gacccacagtcactcagtgatgatgggacatcactcttggttcctggggaggatggggag
gagcagaacattatcttcaggcacaacatccgtcttcagacaccgcagaagaactgtgag
ttggccgacagtgtccaggacctgctagcccgggtgaaaaagctggaggaggagatggca
gagctgaaggagcagtgtagtaccagccgctgctgccagggagctgccgatctgagccgt
cactgcagtgggcatgggaccttcttcgctgagacctgcagctgccactgtgaccagggc
tgggagggcgctgactgtgagcagcccacctgtcctggggcttgcagcggccacgggcgg
tgcgtggatgggcaatgcgtgtgtgatcagccctatgtgggggtcgactgcgcctacgcc
gcctgtccccaggactgcagtgggcatggcgtgtgtgtgcggggtgtctgccagtgccac
aaggacttcacagctgaggactgcagcgagcagcgctgtcctggcgactgtagtggcaac
ggcttctgtgacactggcgagtgttactgcgagatgggctttactggccccgactgttcc
caggtggtggctcctcagggcctgcagttgctcaagagcaccgagaactccctgctggtg
agctgggagccctccagtgaggtggaccactacctgcttagctactaccccttggggaag
gagcaagctacaaaacaggtccgggtgcccaaggagcaacacacctacgacatcactggt
ttgctgcctggcaccaagtacatagtcaccctgcgtaacgtgaagaaggacatttccagc
agccctcagcatctccttgccaccacagatcttgctgtggtgggcacggcctgggtaaat
gaggagactgagacatctcttgatgtggagtgggagaaccctctgactgaggtggactat
tacaagcttcggtatggccccttaacagggcaggaagtgactgaggtcactgtgcccaag
agccgtgatcccaagagtagatatgacatcaccggtctgcagcctggaacggaatataaa
atcacagttgtgcccataagaggagatctggagggaaagccaattctcctcaatggcagg
acagaaattgatggaccaaccaatgtggtcacaaaccaagtgacagaagacacagcatct
gtttcctgggatccagtgagggctgacatagacaagtatgtggtgcgctatatctcccat
gatggggagaccaaggagaaggcagtacccaaggaccagagcagcaccgttctcacgggc
ctgaagccaggagaggcctacaaagtctttgtgtgggctgagagaggcaaccaaggcagc
aagaaagcagacaccaaggccctcacagaaattgacagcccagaaaacctggtgaccgac
cgtgtgacagagaacagtctctctgtctcgtgggacccggtggaggctgaaatagacagg
tacgtggtgagctacacttccgtggatggagagacaaagcaggttccagtgaggaaggac
caaagcagcaccgtcctcaccggcctgagtccaggtgtggagtacaaagtgtacgtgtgg
gcagagaaaggtgatcgagagagcaagaaggccaacaccaaggctcccacagacattgac
agccccaaaaacttggtgactgaccaggtgacagagaacactctcagtgtctcttgggac
cctgttcaggccaacattgacaggtatatggtgagctacacttctgctgatggagagacc
agggaggttccagtgcctaaggagaagagcagcactgttctgacaggcctgaggccaggc
atggagtacaaggttcacgtatgggcccagaaggggacccaggagagcaggaaggccaat
accaaggcccccacagatattgatggccccaaaaacctagtgactgaccaggtgacagag
accactcttagtgtctcctgggacccagtggaggctgacatcgatagatacatggtacgc
tacacgtctcctgatggagagaccaaggaggtccctgtgtcaaaggataagagcagcaca
gtcctgaggggcctgaggccaggtgtggagtacaaggttgatgtgtgggcccagaagggg
gcccaggacagccggaaggccaacaccaaggcccccacagatattgacagtcccaaaaac
ctcgtgactgagcaggtgacagagagcactgccaccgtgtcctgggacccagtagaggct
gacattgacaggtatgtggtgcgctacacctctgtcgatggagagaccagggaatttctc
gttgggaaggatcaaacaagcaccatcctgaccggcatgaaaccgggtgtggagtatcag
gtcgatgtgtgggcccagaaggggacacgggagagcaggaagaccagcaccaaggcccca
acagatattgatggccccaaaaacctagtgactgaccaggtgacagagaccactcttagt
gtctcctgggacccagtggaggctgacatcgataggtacatggtacgctacacgtctcct
gatggagagaccaaggaggtccctgtgtcaaaggataagagcagcacagtcctgaggggc
ctgaggccaggtgtggagtacaaggttgatgtgtgggcccagaagggggcccaggacagc
cgaaaggccaacaccaaggcccccacagatattgacagtcccaaaaacctggcgatcaac
caggtgacagagaccacgctcagtgtctcctgggacccagtacaggctgatatcgacagg
tatgtggtgcgctacacctctgctgatggagaatccaaagaattcttgattgggaaggaa
cagaggagcactgtcctgacaggcctgaggccaggcgtagagtacaaggttgaagtgtgg
gcccagaaaggagcccgggagagcaagaaagccaacaccaaaggccacacagacattgac
agtcccaaaaacctggtgaccaatcaggtgacagaaaatacagccaccatctcctgggac
ccagtgcaggctgatattgacaggtacatggtgcgctacacctctgctgatggagagacc
agggaggttccagtgaggaaggagaagagtagcacggtgctcacaggcctgaggccagga
gtggagtacacagtccaagtgtgggctcagaagggggcccgggagagcaggaaggccaaa
accaaggcccccacagaaattgacagccccaagaacttggtgaccaaccgagtgacagag
aatacagccaccatctcctgggacccagtacgagccaccattgacaggtacatggttcgc
tacacctctgcggatggagagactaaggaggttccagtgtcaaaggaccagagtagcacc
atcctgacaggtctgaagccaggcatggagtataccattcatgtgtgggcccagaagggg
gctcgggagagcaagaaggctgataccaaggccctaacagaaattgaccctcccaaaaat
ttccgtccatttggtgtaacacattccagtggggttttgacctggatgcccccctctgct
caaatcgatggctacattttgacctaccagcttccaaatggcatcttgaaggaggtggag
ctccaaagaggccagcagagatttgagttgcaagacctggaacagggcgtcacctatcct
gtttctctggttgcctttaaaggtaatcagcggagccggagtgtgtctaccaccctttct
acagtggacgcccgatttccacacccctcagactgcagtcaggttcagcagaacaccaat
gctgctgccagtggcctctacacgatctacctcaatggcgatgccagccggcccatgcag
gtttattgtgacatggacacggatggaggcggctggattgtctttcagagacgtaacact
gggcagctggatttcttcaagcgttggcggagttatgtagaaggctttggggaccccatg
aaggagttctggcttggacttgacaaactacataatctcaccactggcactaccactcgg
tatgaggtgagggcagatttacagactgccaatgaatccgcctacgctgtgtatgacttc
ttccaagtggcatccagcaaagagcggtacaagctgtcggttgggaaatacagaggcaca
gcaggggatgctcttacctaccacaatggttggaagttcacaacttttgacagagacaat
gatattgccctcagcaactgcgcgctgacgcatcatggcggctggtggtataagaactgc
catttggccaacccgaatggcaaatatggggagaccaagcacagtgagggggtgaactgg
gagccatggaaaggacatgagttctccattccttacgtggagctaaaaatccgccccttt
ggttacagcagagaccgtttctctggcaggaagaagcggtccataggagggaaggcaaga
gtgttctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

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