KEGG   Rattus norvegicus (rat): 305104
Entry
305104            CDS       T01003                                 
Symbol
Col9a1
Name
(RefSeq) collagen alpha-1(IX) chain precursor
  KO
K08131  collagen type IX alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04151  PI3K-Akt signaling pathway
rno04510  Focal adhesion
rno04512  ECM-receptor interaction
rno04820  Cytoskeleton in muscle cells
rno04974  Protein digestion and absorption
rno05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    305104 (Col9a1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    305104 (Col9a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    305104 (Col9a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    305104 (Col9a1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    305104 (Col9a1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    305104 (Col9a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:rno00535]
    305104 (Col9a1)
Proteoglycans [BR:rno00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   305104 (Col9a1)
SSDB
Motif
Pfam: Collagen Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 305104
NCBI-ProteinID: NP_001094312
RGD: 1309425
Ensembl: ENSRNOG00000012920
UniProt: F1LQ93
Position
9:34081364..34164552
AA seq 934 aa
MVTLINPREPTGKMKNFWKIPLFFFACSFLGPCVSATPKRRARFPANSVSHGGSELCPKI
RIGQDDLPGFDLISQFQIEKAASRRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGL
PEEYSFLTTFRMTGSTLEKQWNIWQIQDSSGREQVGVKINGQTKSVAFSYKGLDGSLQTA
AFLNLQSLFDSRWHKLMIGVERTRATLFIDCIQIDSLPIKPRAQIDADGFAVLGKLVDNP
QVSVPFELQWMLIHCDPLRPRRETCHELPVRITTSQTTDERGPPGEQGPPGPPGPPGVPG
IDGIDGDRGPKGPPGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPG
VPGSRGFPGRGIPGPPGPPGTTGLPGELGRVGPAGDPGKRGPPGPPGPPGPSGTIGFHDG
DPLCPNSCPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGA
QGLRGITGIVGDKGEKGARGFDGDPGPQGVPGAAGDQGQRGPPGETGPKGDRGIQGSRGI
PGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGKPGPPGDAGLQGLPGVPGIPGAKGVAGE
KGNTGPPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGPLGS
PGLPGLPGPPGLPGMKGDRGVFGEPGPKGEQGASGEEGEAGVRGDLGDMGQPGPKGSVGN
PGEPGLRGPEGIRGLPGVEGPRGPPGPRGVQGEQGATGLPGIQGPPGRAPTDQHIKQVCM
RVVQEHFAEMAASLKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGA
LGLRGPKGDLGEKGERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPG
VPGPPGPPGPPGFCEPASCTLQAGQRAFSKGPDK
NT seq 2805 nt   +upstreamnt  +downstreamnt
atggtgactcttataaacccaagagaacccactgggaaaatgaagaacttctggaaaatt
ccacttttcttctttgcatgcagttttctgggaccctgtgtatctgcaactcctaagcgt
cgtgcaagatttcctgccaattctgtttctcatggtggaagtgaactgtgtcccaagatc
aggattggccaggatgacttgccaggatttgacctgatttctcagttccaaattgagaag
gctgcatctcgaaggactatccagagggtggtggggtccacagcgttacaagtggcttac
aagctgggaagtaatgtagacttcaggattccaacaaggcatttgtatcccagtggactg
cctgaagaatattcctttttaactactttccggatgactggaagcacacttgaaaagcaa
tggaacatttggcagatccaggattcctcagggagggagcaagttggcgtgaagataaat
ggccaaacaaagtctgtcgcgttttcatacaagggactggacgggagtctccaaacggca
gccttcttgaatttgcagtccttgtttgactcccgttggcataagctcatgattggcgtg
gagagaacaagagctactctttttattgactgcatccagatcgattccttacctataaag
ccgagagcccagatcgatgctgatggctttgctgtgctgggaaaacttgtggacaatcct
caggtttctgttccctttgaactccagtggatgctgattcactgtgaccccctgagaccc
cggagagagacgtgccatgaactgccagtcagaatcacaaccagccagaccaccgatgag
agaggtcctccgggtgagcaggggcctccggggcctcccgggcctcctggagttccgggc
atagatggtattgatggtgaccgaggtccaaagggtccccccggacctccgggtcctcct
ggagacccgggcaagccaggagcaccaggcaagccaggcactccaggagctgatggatta
acaggacctgatgggtccccgggctccgttggaccaaggggacaaaaaggagaacctggt
gtgcctgggtctcgtggatttccaggccgtggcattccaggaccccctggccctcctggg
accacaggacttcctggagaacttggccgagtaggccctgctggcgaccctgggaaaaga
ggaccacctggtcctcctggacccccaggacctagtggaacaattggatttcatgatgga
gacccattgtgccccaattcctgcccaccaggtcgctctggctatccaggcctaccaggc
atgagaggccacaaaggggcgaaaggagaaattggcgagccaggaagacaaggacacaag
ggtgaagagggtgaccagggggaactgggagaagttggagctcaaggacctccaggagct
caaggtctgagaggcatcactggcatagttggagacaaaggagaaaaaggtgctcgggga
ttcgatggagatcctgggcctcagggcgttccaggtgcagctggtgatcaagggcagcga
ggacctccaggagaaacaggtcctaagggagacaggggcattcaaggttcccgaggaatt
cctggatccccgggtccaaaaggagacacgggcttgccaggtgtcgatggtcgagacgga
atcccgggaatgcctggaacaaagggtgaagcaggaaagcctggacctcccggtgatgcg
ggattgcagggtttaccgggtgtacctgggattcctggtgcaaaaggtgtggccggcgaa
aagggtaacacgggtcctccggggaagcctggtcagttgggaagttcaggaaaaccaggc
caacaaggaccgccgggagaggttggacctcggggacccaggggccttccaggcagcaga
ggcccggtaggaccagaaggctctccaggcataccagggaaactgggacctcttggcagc
cctggccttcctggcttgcctgggccccctggacttcctggaatgaaaggagacaggggt
gtatttggtgaaccaggtcccaagggcgaacagggtgcctctggtgaagaaggtgaagca
ggagtaaggggtgaccttggagatatgggacaacctggcccaaagggatcagtgggtaac
cctggggagcccggcctgaggggacctgaaggaatcagagggcttcctggagtggaagga
ccaagaggaccacctggaccccgaggtgtgcaaggagaacagggtgccactggactgcct
ggtatccagggacctccgggcagagcgccgacggaccagcacatcaagcaggtttgcatg
agagttgtgcaagagcattttgcagaaatggcagctagcctcaagagaccagacacagga
gcttctggtcttcctgggaggcctggtcccccagggcctcccggccctccaggagagaat
ggtttccctggtcagatgggaatccgtggccttccaggcattaagggtccccctggtgct
cttggcttaaggggacctaaaggtgacttgggagaaaaaggagaacgtggtcctccagga
agaggtcctaagggtttgcctggagctatcggtctcccaggtgatccaggccctgccagc
tatgggaaaaatggccgagatggagagcaaggtcccccaggagtggcaggaattcctggt
gtgcctgggcccccaggtcctccaggccctcctggtttctgtgagccagcctcttgcacc
cttcaggcaggtcaaagagcatttagcaaagggcctgacaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

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