KEGG   Rattus norvegicus (rat): 305479
Entry
305479            CDS       T01003                                 
Symbol
Sf3a1
Name
(RefSeq) splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    305479 (Sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    305479 (Sf3a1)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    305479 (Sf3a1)
 Complex B
    305479 (Sf3a1)
 Complex C
   U2 SnRNP specific factors
    305479 (Sf3a1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Ubiquitin_2 Rad60-SLD
Other DBs
NCBI-GeneID: 305479
NCBI-ProteinID: NP_001100705
RGD: 1311477
Ensembl: ENSRNOG00000005218
UniProt: D3ZQM0 A6IKF2
Position
14:83254971..83275720
AA seq 791 aa
MQAGPVQAVPPPPPVVTEPKQPNEEEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFV
ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
QQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFAKLKKEAENPREVL
DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
PEELGARILIQERYEKFGESEEVEMEVESDEEDQEKTEETPSQLDQDTQVQDMDEGSDDE
EEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPA
SKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEET
AIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTK
EKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPAMPPPVRTTVVSAVPVMPRPPM
ASVVRLPPGSVIAPMPPIIHAPRINVVPMPPAAPPIMAPRPPPMIVPTAFVPAPPVAPVP
APAPMPPVHPPPPMEDEPPSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKL
NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH
LALKERGGRKK
NT seq 2376 nt   +upstreamnt  +downstreamnt
atgcaggccggacccgtgcaggcggtacccccgccgccgccagtagtcactgagcccaaa
cagccaaatgaagaagaagcatcatcaaaggaggattccaccccttccaagccagtggtg
gggattatttaccctcctccagaggtcaggaatatcgtcgacaagaccgccagttttgtg
gccagaaatgggcctgagtttgaagctaggattcgacagaatgagatcaacaaccccaag
ttcaatttcttaaatcccaatgacccttaccatgcctactaccgccacaaggtcagcgag
ttcaaggaggggaaggctcaggaaccctcagctgccatccccaaggttatgcagcagcag
cagcaagccacacaacaacagctgccccagaaggtccaagcccaggtgatccaagagacc
atagtaccgaaggagccccctcctgagttcgagttcatcgctgaccccccctccatctca
gccttcgacctggatgtagtgaagctgacagctcagtttgtggccaggaatgggcgtcag
tttctgacccagctgatgcagaaagaacagcgcaactaccagtttgactttctccgaccc
cagcacagcctcttcaattacttcacaaagctggtggagcagtataccaagatcttgatt
ccacccaaaggcttatttgcaaagctcaagaaagaggctgaaaatccccgagaagttttg
gaccaggtttgttaccgagtagaatgggccaaatttcaggaacgtgagaggaagaaggag
gaagaagaaaaagagaaggagcgagtagcctatgctcagatcgactggcatgactttgtg
gtagtggagacagtggattttcaacccaatgagcaagggaactttccacccccaacaaca
ccggaggaactgggagctcggatcctcattcaggaacgctacgagaagtttggggaaagt
gaggaggtggagatggaggttgagtctgatgaggaagatcaagaaaagactgaggagact
ccttcccagctggaccaggatactcaagtacaggacatggatgagggttcagacgatgaa
gaagaaggacagaaagtgcctccacccccagagacacccatgcctccacctctgccccca
acaccagaccaagtcattgtgcgaaaggactatgatcccaaagcttccaagccccttcct
ccagctcctgctcctgatgagtatcttgtgtcccccataactggggagaagattcctgcc
agcaaaatgcaagaacacatgcgcatcgggcttcttgacccccgctggctggagcaacgg
gatcgctccatccgagagaagcagagcgatgatgaggtgtacgcaccaggtctggatatt
gagagcagcctaaagcagttggctgagcgacgtactgacatctttggggtagaagagaca
gccattggtaagaagattggtgaagaggagatccagaagccagaggaaaaggtgacttgg
gatggccattcaggcagcatggcccggacccagcaggctgcccaggccaacatcaccctc
caggagcagattgaggccatccataaggccaagggcctggtgccagaagatgacaccaaa
gagaagattggccctagcaagcccaatgaaatccctcagcagccaccgcctccatcttca
gccaccaatatccccagctcagcgccccccatcacgtcagttccccggccacctgcgatg
ccacctccagtccgcaccactgtcgtatctgcagtgcctgtcatgcctcggccccccatg
gcatctgtggtccggctgcccccaggctcagtgattgccccgatgccacccatcatccac
gcacctaggatcaacgtggtacccatgcctcctgcagcacctcccatcatggcaccccgc
ccacctcccatgattgtgccaacagcctttgtgcctgctccccctgtggctccagtgcca
gccccagctccaatgcctcccgtacaccccccacctcctatggaagatgagcctccatcc
aagaaactaaagaccgaggacagcctcatgcctgaggaagagttcctgcgcaggaacaag
ggtccagtatccatcaaggtgcaggtacccaacatgcaggataagacagaatggaagctg
aatgggcaggggctggtcttcactctcccgctcacagaccaggtctctgtcatcaaagtg
aagattcatgaagccacgggcatgcctgcagggaagcagaaactacagtatgaaggcatc
ttcatcaaggactccaactccctggcttactacaacatggccagtggtgctgtcatccac
ttggccctcaaggaaagaggcggccggaagaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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