KEGG   Rattus norvegicus (rat): 305955
Entry
305955            CDS       T01003                                 
Symbol
Zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13
  KO
K22909  zinc finger CCCH domain-containing protein 13
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    305955 (Zc3h13)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    N6-methyltransferase complex
     305955 (Zc3h13)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_4 Plasmodium_HRP zf-CCCH_2
Other DBs
NCBI-GeneID: 305955
NCBI-ProteinID: NP_001163942
RGD: 1307729
Ensembl: ENSRNOG00000011237
UniProt: E9PSN4 B0BN80
Position
15:57016686..57081201
AA seq 1728 aa
MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTTETQCRNWLKTGSCLYGNTCRFI
HGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDSESQKRNTEESSSPVRKESSRGR
HRDKEDIKIVKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKL
EQENMDKREEIIIQKEVSPEVVRSKLSPSPLRKSSKSPKRKSSPKASSAGKKERKAAVVA
SPLLDQQRNSKSNQSKKKGPRTPSPPPPILEDIILGKKYKEKYKVKDKIEEKPRDGKDRG
RDFERQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRT
LTPSLRRSASPYPTHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREEARG
KRDREKDTREERESEHDHRDDREPRDSRDRRDTRDRRELRDSRDMRDSREIRDYSRDTKE
SRDPRDSRSARDVHDYRDREARDAHARDVRDVRDARDARDVRDVRDVRDARDVRDVRDAR
DVRDARDVRDVRDVRDVRDTRDARDARDARDGHRKEDVYQEEARSYGRNHLREESSRVEL
RNDSRNESRSEIRNDRMGRSRGRGPELPEKGGRSTRGSQMDSHSSGSNYHDSWETRSSYP
ERDRYPERDTRDQARDSSFERRHGERDRRDNRERDQRPSSPIRHQGRSEELEREERREER
RIDRVDERRDERVRDRDRERERERERERDREREREREKERERELERERAREREREREKER
ERERERERDQRDRDHDREREREREREREKEREREERERERERERERERERERERERERER
ERERERAREREKERERQREWEDKDKGRDDRREKREDVHVREDRIPRDGHEERKSKKRYRN
EGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGR
WKEEERKSERKESSRRYEEQELKEKLSCGDRQREQTESVDGGSRARSAQDLLSHRQAEDR
DRDGSDRAHDEKKKAKAPKKPVKKKREEDVGIERGNPETHEDSQVFSPKKGQKKKNIEKK
RKRSKGDSDVSDEEAAPQSKKKRGPRTPPLAIKEELIEISTDKEGILEDPLKKEDTAFSD
WSDEDVPDRTDGLEAEHTAAAATPGSTPSPMSSLLPPPPPVAAAGTAATALAASAISATT
STTISSSGATSNINASEDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSLGSNRS
HRSHTSGRLRSPSNDSAHRSGDDQGGRKRVLHSGSRDREKTKSLELTGERKSRIDQLKRG
EPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRD
PRQREWDREADKEWPRTRDRDRLRERERDRDKRRDLDRERERLVADPMERDRERDRTFET
SQLESVKRSEVKLESEHDRDLEGSSRDSVALDKERMDRDLGSAQGFEDVSKAERTESLEA
GDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDQQEEEKMPDPLDVIDVDW
SGLMPKHRKEPREPGAALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQQLLEKPKDAD
SLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAYT
NTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSGQQELCVS
NT seq 5187 nt   +upstreamnt  +downstreamnt
atgtcaaaaattaggaggaaggtcacagtggaaaacaccaagaccatatctgaaagcaca
tcccgaagacctagtgtgtttgagaggcttggacccagcactggaagcacaacagagaca
cagtgccgtaactggctgaagaccggcagctgcctctatggaaacacatgtaggttcata
catggcccttcacctcgtgggaaaggttacagcagcaattacagaaggtcaccggaaagg
cctacaggtgatctcagagaaagaatgaagaataagcgtcaggatgtggattctgaatcc
cagaaacggaacacagaggagtcatcctcacctgttaggaaagaatcttcaagagggaga
catagagacaaggaagacataaaaattgttaaagagagaactccagaaagcgaagaagaa
aacgtagaatgggaaaccaacagagatgattctgacaatggagatattaattacgattat
gttcatgagttatcattggaaatgaagcgtcagaaaatacagagagaattaatgaagttg
gaacaagaaaacatggataaaagagaagaaattattattcaaaaggaggtttccccagaa
gtggtgagatcaaagttgtctccatcacctctgagaaagtcgagtaaatctccaaagcgg
aagtccagccccaaggcatcttcagctggcaagaaagagcggaaggctgctgtggtggct
tccccgctgctggaccagcagagaaattcaaaaagcaaccaaagtaaaaagaaagggcca
cgcactcctagtccacctcctcctatactagaagatatcattctgggaaaaaaatacaaa
gaaaagtataaagtgaaagacaagatagaagaaaaaccaagagatggaaaggacagagga
cgggattttgaaaggcaaagagaaaaacgagacaaaccaaggtcttcctccccgggacag
caccattctcctctgtcttctagacatcactcgtcgtcctcacagtcagggtcatctatt
cagagacattctccctctcctcgccggaaaagaactccttccccatcctaccagaggact
ttaactccatctttacgacgttctgcatctccttatccaacccattgtctgtcttctcct
cagagaaagcaaagtcctccaagacatcgctctccaatgagagagaaagggaggcatgat
catgaacggacttcacagtcacatgatcggcgtcatgaaaggagggaagaagctcgaggc
aaaagggatagagaaaaggacaccagagaagagcgagagtctgaacatgaccacagggat
gacagagaaccgcgagacagtcgggaccggagagacactagagaccgcagggaacttaga
gactccagagacatgcgggactccagagagataagggattatagcagagacaccaaggag
agccgtgatcccagagattcccggtcagctcgggatgtccatgactacagggaccgtgaa
gctcgggatgctcatgctcgagatgttcgggatgtcagggatgctcgagatgctcgagat
gttcgggatgtccgggatgtcagggatgctcgagatgtccgggatgttcgggatgctcga
gatgtccgggatgcccgggatgtccgggatgttcgggatgtccgggatgtccgggacacc
agagatgcccgggatgcccgggatgctcgagatggtcatcgaaaggaggatgtataccag
gaagaagcccgtagttatggcagaaaccacctgagagaagagagttctagagttgaacta
aggaatgactctagaaatgagtctcgaagtgaaattagaaatgaccgcatgggcagaagt
agggggagaggtccagaactgcctgaaaagggaggtcgaagcacaagaggttcccaaatg
gatagccacagtagtggcagcaactaccatgacagctgggaaactcgaagtagctatcct
gaaagagacagataccctgagagagataccagagatcaagcaagggattcttcctttgag
agaaggcatggagaaagagaccgtcgggataacagagaacgagatcaaagaccaagctca
cctattcgccatcaggggaggagtgaggagcttgagcgagaggaaagaagagaggaaaga
cgaatagacagagtggatgagagacgagatgaaagggtcagagacagagatagggagaga
gagagagagcgggagagggagagagatcgggaacgggagcgggagcgggaaaaggaaaga
gaaagagaactagaaagagagagagctagagagcgggagagagagagagagaaagagagg
gagagagagcgagaaagagaaagagatcagagagatcgtgaccatgatcgagagcgagaa
agagagagggagcgagagagggaaaaagaacgggagcgagaagagagagagagggagaga
gaaagggaaagggaacgggaaagagaaagggaacgggagcgggagagagagcgagaacgt
gagcgggagcgagaaagggccagagaaagagaaaaagaacgagagcggcaaagagaatgg
gaggataaagacaagggacgcgatgaccggagggagaagcgcgaggacgttcatgttcga
gaggacaggatccccagagacggccacgaggagagaaagtccaagaaacgctatagaaat
gaagggagtcccagcccccggcagtcccccaagcgccggcgggagcattctcctgacagt
gacacctaccacagtggggatgacaaaaatgaaaagcatagactcttgagccaggtcgta
cggccacaggaatctcgttctctcagcccgtcccacctcacagaagacaggcagggtaga
tggaaagaggaggagcgtaaatcggaaaggaaggagagttcaaggcgctatgaagaacaa
gaactcaaagagaagctttcttgtggcgacaggcaaagggagcagacagaaagcgtggac
ggcggctcgagagcgcgcagcgcgcaagacctgctcagccatcgccaggctgaagaccgc
gaccgagatgggtctgatcgagcccatgatgaaaagaaaaaagcaaaagctccgaagaaa
cccgtaaagaaaaagagggaggaggatgttggaatagagaggggcaaccctgagacacac
gaggatagtcaagtgttttcaccaaaaaaaggacagaaaaagaaaaacattgaaaaaaag
cgtaaaagatccaagggggattctgatgtttctgacgaagaggcagccccgcagagtaag
aagaagaggggtccacgcacaccccctcttgccatcaaggaggagctgattgagatttcc
actgacaaggaaggcatccttgaggatcccctgaagaaagaagataccgcctttagtgac
tggtctgatgaggatgtgcctgaccgcacagacggcttggaagctgagcacactgcagcc
gcggccactcccgggagcaccccttcccccatgtcgtctcttctccctcccccgccccct
gtggctgctgccggtactgcagccactgctcttgccgcctcagccatttctgccaccacc
tctaccaccatttcaagctctggtgccacctccaatatcaatgccagtgaagactcacac
agaaaatgccacagggcacgaggggagaaggtagaggtgtctcatgtgaccctggaagat
acaccacatcgcaaactggtggatcaaaagagaagcagcagcctgggaagcaatcggagt
caccgcagccatacctctggtcgcctgcgctccccatctaatgattctgcacatcgaagt
ggggacgatcagggtggtcggaagagagtgctccacagtggctccagagatagagaaaag
acaaagagcctagagctcacaggagagagaaaatctaggatcgatcagttaaagcgtgga
gagcccagtcggagtacttcttcagatcgccaggattccagaagccacagctccagaaga
agctctcctgagtcagaccgacaggttcactccaggtctgggtcatttgacagcagagac
cggcttcaagaacgagataggtatgagcatgacagagagcgtgagagggagcggagagat
cccagacaaagggagtgggaccgggaagcagacaaagagtggcctcggacccgagaccgt
gatagacttcgggaacgcgagagagaccgagacaaaaggagagacttggacagagagaga
gagagactggtcgccgaccccatggaaagagacagagaacgagatagaacttttgagacg
tctcagttggaatctgtgaagcgaagtgaagtcaaattggagagtgaacacgacagagac
ctggagggcagctcccgggactctgtggccttggacaaagaaaggatggacagagacctg
gggtctgcgcaggggtttgaggatgtgagtaaagcggagagaacagagagtctggaagca
ggagatgacgagtccaagttagatgatgcgcattcgttagggtctggtgctggggaaggc
tatgagcccatcagtgacgacgagctagatgaaattctggcaggggatgcagaaaagaga
gaggaccagcaggaagaggagaagatgccagatccattagatgtgatagatgtggactgg
tctggactaatgccaaagcatcggaaagagccgagagagcccggggctgcactcttaaag
ttcacacccggagccgtgctactacgagttgggatttctaaaaagttggccggttctgag
ctctttacaaaagttaaagaaacatgtcaacaacttctagagaaacccaaagatgcagac
agcctttttgaacatgaactaggggctctcaacatggctgctttacttcgaaaagaagag
cgggcgagtctccttagtgacctgggaccatgttgtaaagcattatgtttcagacgggat
tctgcaatccggaagcagcttgtgaagaacgaaaagggaaccgtgaagcaggcgtacacc
aacactccgatggtggacaacgagctgcttcggctgagtcttcggttactcaagaggaag
acttcctgccacacccctgggcaggaaaagactgaagatgggaaattagccccgtgcagt
ggccagcaggagctgtgtgtgtcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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