KEGG   Rattus norvegicus (rat): 306081
Entry
306081            CDS       T01003                                 
Symbol
Pcdh20
Name
(RefSeq) protocadherin-20
  KO
K16498  protocadherin delta 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    306081 (Pcdh20)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    306081 (Pcdh20)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     306081 (Pcdh20)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   306081 (Pcdh20)
SSDB
Motif
Pfam: Cadherin Cadherin_2
Other DBs
NCBI-GeneID: 306081
NCBI-ProteinID: NP_001100750
RGD: 1306297
Ensembl: ENSRNOG00000013306
UniProt: A6HU36 D4ADD1
Position
15:complement(70834042..70840298)
AA seq 952 aa
MRGQGNARSSLVQAVSLRPATWHPCLDMGHLHRPSSRTSHRNLPHVVLLFLFVGPFNCLA
SYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRASGRQSQQLLHPERTAAEGNPPLSFS
LASGGLSGQYVTLDNRSGELHTSAQEIDREALCLDGGGGAAWGGSTSIASSPSSDSCLLL
LDVLVLPQEYFRFVKVKIAIRDINDNAPQFPISEISVWVPENSPVNTRLAIEHPAVDPDV
GINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPP
LLGSATLTIGISDINDNCPLFIDSQINVTVYGNATVGTPVTTVQAVDRDLGTNAQITYSY
SQKVPQESKELFHLDEVTGVVKLSSKIGGNVLQTHKLTILANGPGCIPAVITALVSIIKV
VFRPPEIVPRYIANEMDGVVYLKELEPVNTPIAFFTIRDPEGKYKINCYLEGEGPFRLAP
YKPYNNEYLLETTKPMDYELQPFYEIAVVAWNSEGFHDKRIIKVQLLDDNDNAPVFLQPL
IELTIEENNAPNAFLTKLYATDADSGEMGRVSYFLGPDAPSYFSLDSVTGILTVSTQLDR
EEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIG
VISVTDADAGRNGWVALSVMNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGE
PALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAV
IAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIKPTHRKVESMSCMPTLVALSVISLA
SITLVTGMGIYICLRKGKKHHREDDNLEVQIPLKGRIDLCMRERKPMDISNI
NT seq 2859 nt   +upstreamnt  +downstreamnt
atgcgcggccaagggaacgcgcgcagctcgctggtccaggcagtgagcttgcgcccagcg
acctggcacccgtgcctggatatggggcatctacatcgtcccagcagcaggaccagccac
aggaacctgccgcatgttgttctgcttttcctcttcgtgggacccttcaactgcctcgcg
agttacagtcgtgctaccgagcttctgtacagcctaaacgaaggactgcccgcgggagtg
ctcataggcagcttggcggaggacctgaggttgctgcctcgggcctctgggagacagagc
cagcagttgctgcatccagagcgcactgctgctgaggggaacccccctctctctttcagc
ttggcctccgggggactgagtggccagtatgtgaccctagacaaccgctccggggagctg
cacacttctgcacaggagatcgacagagaagcattgtgcttggatggtggtggaggggct
gcctggggcggcagtacctccattgcctcctctccttcttctgattcttgccttttgctt
ctggatgtgctggtcctgcctcaggaatattttaggtttgtgaaggtgaaaattgccatc
agggatatcaatgacaatgctccgcagttccccatttctgaaatctctgtttgggtcccg
gaaaattcacctgtaaatacccgattggcgatagagcatcctgctgtggacccggatgta
ggcattaatggtgtgcaaacctatcgcttactggactaccatggtatgtttaccctagac
gtggaggagaatgagaatggggaacgcacaccctacttgattgtcatgggcgctttggac
agagaaacccaggaccagtatgtgagcatcatcatagctgaggatggtgggtctccgcca
ttgctgggcagcgccaccctcaccattggcataagtgacattaatgacaattgtcctctc
ttcatagactcacaaattaatgtcaccgtttatggaaatgctacagtgggcacccctgtc
acaacagtccaggctgtggatagagacttggggacaaacgcacagatcacttacagttac
agtcagaaagttccacaagaatccaaggaattattccacctggatgaagttactggagtc
gttaagctttccagtaagatcggtgggaatgttctacagacacataagctcaccatcctc
gctaacggacctggctgtattcccgcagtgatcactgctctcgtgtcgatcatcaaagtc
gttttcagacccccagaaattgtcccacgttatatcgcaaatgagatggatggtgtcgtg
tatctgaaagaattggagcctgttaatactccaatcgcgttttttaccatcagagatccg
gaaggcaaatacaaaattaactgctacttggagggtgaagggccattcaggctagcaccc
tacaagccatacaacaatgaatacttgttggagaccacaaaacctatggactatgagctg
cagccgttctatgaaatagctgtagtggcctggaactcagaggggtttcatgacaagaga
atcattaaagtacaacttctagatgacaatgacaatgcccctgttttccttcagcccttg
atagaactgaccattgaagaaaacaatgcacccaatgcctttctgacgaagctctatgct
acagatgccgacagtggagagatgggccgagtttcctacttcttgggacccgatgctccg
tcctatttttccttagacagcgtcacagggattctgaccgtttccactcagctggacaga
gaagagaaagaaaagtacaggtacactgtccgagcagtggactgtgggaagccacccaga
gaatcagtggctacagtggctctcaccgtgttggataaaaatgacaacagtccgaggttc
atcaacaaagacttcagcttttttgtgccagaaaactttccgggatatggtgaaattgga
gtcattagtgtaacagatgctgatgctgggaggaatggatgggtagccctctcggtaatg
aaccagagtgatattttcgtcatagatacaggtaaaggcatgttgagagctaaagtctct
ttagacagagaacagcaaagctcatacactctgtgggtggaagctgttgatgggggtgag
cccgccctttcttctaccacaaaaatcacaattctccttctggacatcaatgataaccct
ccccttgttttgtttcctcaatctaatatgtcttacttgctggtcctaccttctactctc
cctggctcaccagtgacagaggtctatgcagttgacaaagatacaggcatgaatgcagtc
atagcttatagtatcatagggagaagaggtcccaggcctgagtccttcagaattgacccc
aagactggcaacatcactctggaggaagccttgctgcagacagattatggtttgcatcgc
ttactcgtgaaagtgagtgatcacggataccccgaacctctccattccacggtcatggtg
aacttatttgtcaatgacactgtcagtaacgagagctacattgagagccttttaaggaag
gaaccagaaattaatatagaagagaaagaaccacaaatctcaataaagccaactcatagg
aaggtagagtctatgtcctgtatgcccacattggtggctctgtctgtcataagcttggct
tccatcacactagttacagggatggggatatacatttgcttacggaaaggtaaaaaacat
cacagggaagacgacaatttggaagtacagattccattgaaaggaagaattgacttgtgt
atgagagagagaaaaccaatggacatttctaacatttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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