KEGG   Rattus norvegicus (rat): 306222
Entry
306222            CDS       T01003                                 
Symbol
Lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    306222 (Lsm5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    306222 (Lsm5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    306222 (Lsm5)
   03041 Spliceosome [BR:rno03041]
    306222 (Lsm5)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     306222 (Lsm5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     306222 (Lsm5)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    306222 (Lsm5)
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 306222
NCBI-ProteinID: NP_001100759
RGD: 1308655
Ensembl: ENSRNOG00000042126
UniProt: A6K112
Position
4:complement(87281260..87284476)
AA seq 91 aa
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggctaacgcgaccacgaacccgtctcaactcctgccactagagcttgtggacaag
tgtataggatcaagaattcacattgtgatgaagagtgataaagaaatcgtgggtacactt
ctaggatttgatgactttgtcaatatggtgttggaagatgtcacagagtttgaaattaca
ccagaaggaagaagaattacaaaattagatcaaattctactaaatggaaataatataaca
atgctggttcctggaggagaagggcctgaagtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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