KEGG   Rattus norvegicus (rat): 306231
Entry
306231            CDS       T01003                                 
Symbol
Pde12
Name
(RefSeq) 2',5'-phosphodiesterase 12
  KO
K19612  2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    306231 (Pde12)
   03029 Mitochondrial biogenesis [BR:rno03029]
    306231 (Pde12)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     306231 (Pde12)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     306231 (Pde12)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    306231 (Pde12)
SSDB
Motif
Pfam: PDE12-like_N Exo_endo_phos
Other DBs
NCBI-GeneID: 306231
NCBI-ProteinID: NP_001398637
RGD: 1310975
Ensembl: ENSRNOG00000059442
Position
16:complement(1926807..1932383)
AA seq 608 aa
MWRLPGRAALRGVRSVVEQRSPAEATTHEAVRAMERAVVRCVPSEPKLSLSFALADGSHK
NMQRDQSEPLGRALSRIATNALKGHAKVAAAKKSRKNRAHSSGGAACAATGSEPAATCEP
VVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVCP
KLGLEFGDPASSVFRWYKEVKPGAAEPGDSGLASSSHSLQSSAWIETGVDERVYTPCNAD
IGLRLKLHCTPGNGQRFGPSRELESVCPVEAGPGTCTFDHRHLYTKKVTEDSFIRTVSYN
ILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRAVFSDSL
VPALEAFGLEGVFRIKQHEGLATFYRKSKFRLLSQHDISFQEALKSDPLHKELLEKLALN
PLAQEKVLQRSSVLQISVLQSTTDSSKKICVANTHLYWHPKGGYIRLIQMAAALVHIRHV
SCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSVPEDHEDWASNGEEERCGMSLTHCFKLK
SACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHIA
LVCDLKWK
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgtggaggctcccaggccgcgccgcgcttcgtggggtccggtcggtggtggagcagcgc
agcccggccgaggcaacgactcacgaggcggtgcgcgccatggagcgcgcggtggtgcgc
tgtgtgccctcggagcccaagctcagcctgtcttttgcgttggccgacggcagccacaaa
aacatgcagcgggaccagagcgagcctctgggccgtgctctcagccggatcgctaccaac
gccctcaaggggcacgctaaggtagcggctgccaaaaagagcaggaagaaccgagcccac
tcgagcggtggcgcggcctgcgcggcgacagggtctgaaccggctgcgacctgcgagccg
gtggtgaagctgtactaccgggaggaggcggtagctgaggatgtgctcaatgtggacgcc
tggcaggacggagcggtgctgcagatcggcgatgtcaagtacaaggtggagcgcaacccg
cctgccttcacggagctacaattgccgcgctacatcatggctggcttcccggtgtgtccc
aaactcggtctggaatttggggatcccgccagctccgtgttccgctggtacaaggaagtc
aaacccggggcggcagaacctggagacagcggtctcgcgtcatcgtctcactctttgcag
tcttcagcttggatcgagacgggtgtggacgagcgcgtttacaccccgtgcaatgctgac
atcgggctacggctcaagcttcactgcacgccgggcaatgggcagcgcttcgggccaagc
cgcgagctagagagcgtgtgcccggtggaggccgggcctggcacctgcacttttgaccat
cgacatctatacaccaagaaggtgacagaggactctttcatccgcactgtctcctacaac
atcctggcagacacgtacgcccagactgagttttctcggacagtcctgtacccgtactgt
gccccctacgccctggagcttgactaccgccagaaccttattcaaaaggagctcacaggc
tacaacgcagacctcatctgtttgcaggaggtggaccgcgcagtgttctcggacagcttg
gtaccggccctagaggccttcgggctggagggtgtgttccgaatcaagcagcacgaaggc
ctggccactttctaccggaagtcgaagttcaggctccttagccaacatgacatttctttt
caagaagccctgaagtcggacccactgcacaaagaattactagagaaactggctttgaac
ccgttagcacaggagaaagtactccagagatcgtctgtccttcagatttcagttcttcag
tctaccacggactcttctaaaaagatctgtgttgctaatactcatctctactggcaccca
aaaggtggatacattcgtctcattcaaatggcagcagccttggttcacattagacatgtt
tcctgtgatctatatcctggcataccagttatattttgtggagactttaatagcacacca
tcaacaggaatgtatcattttgtcatcaatggcagcgttccggaggatcatgaagactgg
gcttccaatggggaggaggagagatgtggcatgtctctcacacactgtttcaaactgaaa
agcgcttgtggtgaacctgcctacacaaattatgtcggtggctttcatggatgtctcgat
tacattttcattgacttaaatgctttagaggttgaacaggtgatcccattacctagccat
gaagaagttaccacccaccaggccttacctagtgtttctcatccttctgatcacatagca
cttgtatgtgacttaaaatggaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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