KEGG   Rattus norvegicus (rat): 306254
Entry
306254            CDS       T01003                                 
Symbol
Pbrm1
Name
(RefSeq) protein polybromo-1 isoform X7
  KO
K11757  protein polybromo-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    306254 (Pbrm1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    306254 (Pbrm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    306254 (Pbrm1)
   03036 Chromosome and associated proteins [BR:rno03036]
    306254 (Pbrm1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     306254 (Pbrm1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   PBAF complex
    306254 (Pbrm1)
SSDB
Motif
Pfam: Bromodomain BAH HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 306254
NCBI-ProteinID: XP_038951030
RGD: 1565549
Ensembl: ENSRNOG00000028227
Position
16:6219933..6319336
AA seq 1726 aa
MRRLAFRGAGCALVKLKKLESMGSKRRRATSPSSSVSGDFDDGHHSVPTPGPSRKRRRLS
SLPTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQ
KLKMEEYDDINLLTADFQLLFNNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADD
EDDDEDGQDNQGTMADGSSPGYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPD
YYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKI
FYMKKAEIEHHEMTKSSLRIRTATNLAAARLTGPSHNKSSLDEERNPTSKCYRNKRAVQG
GRLSAITMALQYGSESEEDAALAAARYEEGESEAESITSFMDVSNPFHQLYDTVRSCRNN
QGQLIAEPFFHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENA
KRYNVPNSAIYKRVLKLQQVMQAKKKELARRDDIEDGDSMISSATSDTGSAKRKRNTHDS
EMLGLRRLSSSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIIL
EPMDLKIIEHNIRNDKYAGEEGMMEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKDKRK
ELGPLPDDDDMASPKLKLSRKSGVSPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAI
FLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPES
LIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDS
LAEIPAVDPNFPSRPPLTFDIIRKNVESNRYRRLDLFQEHMFEVLERARRMNRTDSEIYE
DAVELQQFFIRIRDELCKNGEILLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREE
EKREAEKSEDSSGTTGLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERL
WEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEY
FKLCPETFRDEDVFVCESRYSAKTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFAN
ADKGDEEKSTDNSDDNRAEDSFNLEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDC
VFIKSHGLVRPRVGRIEKVWVRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEET
CPMSCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKV
VDDEIYYFRKPIIPQKEPSPLLEKKIQLLEAKFAELEGGDDDTEEMGEEDSEVIEPPSLP
QLQTPLANELDLMPYTPPQSTPKSAKGSAKKESSKRKINMSGYILFSSEMRAVIKAQHPD
YSFGELSRLVGTEWRNLETAKKAEYEERAAKAAEQQERERAAQQQQPSASPRAGTPVGAL
MGVVPPPTPMGMLNQQLTPVAGMMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHL
PPGVPGLPGIPPPGVMNQGVTPMVGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPTGP
PVIQQPTTPMFVAPPPKTQRLLHSEAYLKYIEGLSAESNSISKWDQTLAARRRDVHLSKE
QESRLPSHWLKSKGAHTTMADALWRLRDLMLRDTLNIRQAYNLENV
NT seq 5181 nt   +upstreamnt  +downstreamnt
atgaggagattggcttttcgaggcgctggttgtgctctggtaaagctgaagaagttggag
tccatggggtccaagagaagaagagccacctccccgtccagcagtgtcagtggagacttt
gatgacgggcaccattctgtgcctacaccgggcccaagcaggaaaaggagaagactgtcc
agtcttcctaccgtagatcctattgctgtgtgccatgaactctataacaccatccgggac
tataaggatgaacagggcagactcctctgtgagctgttcattagggcaccgaagcggaga
aatcaaccagactattatgaagtggtttctcagcccattgacttgatgaaaattcaacag
aaacttaaaatggaggagtatgatgatattaatctactgactgctgacttccagctgctt
tttaacaatgcaaaggcctattataagccagattcccctgagtataaagctgcttgtaaa
ctctgggatttgtaccttcgaacaagaaatgagtttgttcagaaaggagaagcagatgat
gaagatgatgatgaagatgggcaagacaatcaaggaacgatggctgacggctcttctcca
ggttacctgaaggagatcctggaacagcttctcgaagccatagttgtagccacaaatcca
tcaggacggctcatcagtgaactttttcagaaactgccttccaaagtgcaatatccagac
tattatgcaataattaaggagcctatagatctcaagaccattgctcagaggatacagaac
ggaagctacaaaagtatacatgcaatggccaaagatatagatcttctcgcaaaaaatgcc
aaaacatacaacgagcctgggtctcaagtattcaaggatgccaattcgattaaaaaaata
ttttatatgaaaaaggcagaaattgaacatcatgaaatgactaaatcaagtcttcgaata
aggactgcaacaaatttggctgcagccaggctgacaggtccttcgcacaataaaagcagc
cttgatgaagaaagaaaccccactagcaagtgttaccgtaataaaagagcagtccaaggg
ggtcgcttgtcagcaattaccatggcacttcagtatggctcagagagtgaagaggatgct
gctttagctgctgcgcgttatgaagaaggggagtctgaagcagagagcattacttccttt
atggatgtttcaaaccctttccatcagctttacgacacggtgaggagctgtcggaataac
caggggcagctcatagccgaaccttttttccatttgccttcaaagaaaaaatacccagat
tattatcagcaaattaaaatgcccatatcacttcaacagatcagaacaaaactgaagaac
caagaatacgaaaccttagatcatctggagtgcgatctgaatttaatgtttgaaaatgcc
aagcgctacaacgttcccaattcagccatctacaagagagtcctgaagctgcagcaggtc
atgcaggccaagaagaaagagcttgccaggagagatgacattgaggatggagacagcatg
atctcctcagccacttctgatactggtagtgccaaaaggaaaaggaatactcatgacagt
gagatgttgggtctcaggaggctatccagcagtaaaaagaacataagaaaacagcgaatg
aaaattttattcaatgttgttcttgaagctcgagagccaggttcaggcagaagactttgt
gatctatttatggttaagccatccaagaaggactatcctgattattataaaatcatctta
gagccaatggacctaaaaataattgagcataacatccgaaatgacaagtacgcaggtgaa
gaagggatgatggaggacatgaagctcatgttccgcaatgccaggcactacaatgaggag
ggctcccaggtatacaatgatgcccatatcctggagaagttactcaaagataaaaggaaa
gagctgggaccattgcctgatgatgatgacatggcttctcccaaacttaaactgagtaga
aagagtggtgtctctcctaagaaatccaagtacatgactccaatgcagcagaagctgaac
gaagtgtatgaagccgtgaagaactatactgacaagaggggccgccgcctcagtgctata
tttctaagactcccctccaggtcagagctgcctgactactatctgaccattaaaaagccc
atggacatggaaaaaatccgaagtcacatgatggcaaacaagtaccaagatatcgattct
atggtggaggacttcgtgatgatgtttaacaatgcctgtacctacaatgagccagaatct
ttgatctacaaagatgcccttgtcctccataaagtcctccttgaaactcggagagacctg
gagggagacgaggattctcatgtccctaacgtgaccctgctgattcaagaacttatccat
aatctctttgtgtccgtcatgagtcatcaggatgatgaaggaagatgttacagtgactcc
ttagcagaaattcctgctgtggatccgaactttcccagcagacctccccttacatttgac
attattaggaagaatgttgaaagtaatcgatatcggcgactcgatttatttcaggagcat
atgtttgaagtattggaaagggccagaaggatgaatcggacagattccgaaatctacgag
gatgcagtagaacttcagcagttttttattagaattcgcgatgaactctgcaaaaatgga
gagatccttctttccccagcactcagctataccacaaaacatttgcataatgatgtggaa
aaagagaaaaaggaaaaattacctaaagaaatagaggaagataaactaaagcgagaagaa
gagaaaagagaagctgaaaaaagtgaggattcctcaggtactacaggcctctcaggctta
catcggacatacagccaggactgcagctttaagaatagtatgtatcacgtcggagattat
gtctatgttgaacctgcagaggccaatctacaaccacatatagtctgtattgagagacta
tgggaagattcagctggtgaaaaatggctatacggctgttggttctatcggccaaatgaa
acattccatttggctacacgaaaatttctagaaaaagaagtttttaagagtgactattac
aataaagtccctgttagtaaaattctaggcaaatgtgtggtcatgtttgtcaaggaatac
tttaaattatgtccagaaaccttccgcgatgaggatgtttttgtctgtgaatcaaggtat
tctgccaaaaccaagtcttttaagaagattaaactgtggaccatgcccatcagttcagtt
aggttcgtccctcgggacgtgcccttgcctgtggtccgagtggcctctgtatttgcaaat
gcagacaaaggggatgaggagaagagtacagacaactcagatgacaatcgggctgaagac
agctttaacttggaaaaggaaaaagaagatgttcctgtggagatgtccaatggtgagcca
ggttgccactactttgagcagcttcgttacaatgacatgtggctgaaggttggcgattgt
gtcttcatcaaatcccacggcttggtccgccctcgtgtgggcagaattgaaaaagtatgg
gtccgagatggagctgcatatttttatggtcctatcttcattcacccagaagaaacagaa
catgagcccacaaaaatgttctacaaaaaagaagtgtttctgagtaatctggaagaaacc
tgccccatgagttgtatcctaggaaaatgtgctgtgttgtcattcaaggacttcctctcc
tgcaggccaactgaaataccagaaaatgacattctgctttgtgagagccgctataatgag
agtgacaagcagatgaagaaattcaaggggttgaagaggttttcactctctgctaaagtt
gtagatgatgaaatttactacttcagaaaaccaatcattcctcagaaagaaccctcacct
ttgttagaaaagaagatacaattgctagaagctaaatttgctgagttagaaggtggagat
gatgatactgaagagatgggagaagaggacagtgaagtcattgagcctccttctctccct
cagcttcagacacccctggcgaatgagctggacctcatgccctatacacccccacagtct
accccaaagtctgccaaaggcagtgcaaagaaggaaagttctaaacggaaaatcaacatg
agcggatacattttgttcagcagtgaaatgagagctgtgattaaagcccagcacccagac
tactcttttggggagctcagcagactggtggggacagaatggagaaaccttgaaacagcc
aagaaagcagaatatgaagagcgggcagctaaagctgctgagcagcaggagagagagcga
gcagcacagcagcagcagccgagtgcttctccccgagcaggcacccctgtgggggctctc
atgggggtggtgccaccaccaacaccaatggggatgctcaatcagcagttgacacctgtt
gcaggcatgatgggtggctatccgccaggccttccacctttgcagggcccagttgatggc
cttgttagcatgggcagcatgcagccacttcaccctggggggcctccacctcaccatctt
ccgccaggggtgcctggcctcccaggcatcccgccacccggtgtgatgaatcaaggagtc
acccccatggtagggactccggcaccaggtggaagtccatatggacaacaggtaggagtt
ttgggacctccagggcagcaggcaccacctccatatcctggtcctcatccaactggcccc
cctgtcatacagcagccaacaacacccatgtttgtggctcccccaccaaagacccaaagg
cttctccactcagaggcctacctgaaatacattgaaggactcagtgctgaatccaacagc
atcagcaagtgggaccaaactctggcagctcgaagacgggatgtccatttgtcaaaagaa
caggagagccgcctaccttctcactggctcaaaagtaaaggggcacacaccaccatggca
gatgccctctggcgcctgcgggatttaatgcttcgagacactctcaacatccgacaggca
tacaacctagaaaatgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (51)   
   RefSeq(pep) (51)   
DNA sequence (51)   
   RefSeq(nuc) (51)   
Protein domain (4)   
   Pfam (4)   
All databases (118)   

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