KEGG   Rattus norvegicus (rat): 306790
Entry
306790            CDS       T01003                                 
Symbol
Sema4d
Name
(RefSeq) semaphorin-4D precursor
  KO
K06521  semaphorin 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    306790 (Sema4d)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:rno04090]
    306790 (Sema4d)
CD molecules [BR:rno04090]
 Proteins
  306790 (Sema4d)
SSDB
Motif
Pfam: Sema PSI ig Ig_3 Ig_5 I-set DUF3891
Other DBs
NCBI-GeneID: 306790
NCBI-ProteinID: NP_001164034
RGD: 1310554
Ensembl: ENSRNOG00000013679
UniProt: A0A8I6G5Q1
Position
17:13582085..13688889
AA seq 862 aa
MKMCAPVRGLFLALVAVWRTAVAFAPVPRITWEHGEVGLVKFHEPGIFNYSSLLMSEDKD
TLYVGAREAVFAVNALDISEKQHEVYWKVSEDKKSKCAEKGKSKQTECLNYIRVLQPLSS
TSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDPAHSYTSVMVGGELYSGTSYN
FLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIHKSPDGTEAEDDKVYFFFTEVSV
EYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNILQDVFVLR
APGLKEPVFYAVFTPQLNNVGLSAVCAYTLSTVEAVFSRGKYMQSATVEQSHTKWVRYNG
PVPTPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPKLIKKDVNY
TQIVVDRTQALDGTFYDVMFLSTDRGALHKAVILAKEVHVVEETQLFQDFEPVLSLLLSS
KKGRKFVYAGSNSGVVQAPLAFCGKHSSCEDCVLARDPYCAWSPAIKACVTLHQAEGSSR
GWIQDMSGDTSSCLDKSKESFHQHFFKHGGTAELKCFQKSNLARVVWKFQNGELKAVSPK
YGFVGRKHLLIFNLSDGDSGVYQCLSEERVRNKTVSQLLAKHILEVKMVARIPPSPTSQT
AQTEGSRITSKMPVASTQGSSPPTPALWATSPRAATLPPKSSSTGTSCEPKMVINTVPQL
HSEKTVYLKSSDNRLLMSLLLFLFVLFLCLFSYNCYKGYLPGQCLKFRSALLLAKKKPKS
EFSDLEQSVKETLVEPGSFSQQNGDQPKPALDTGYETEQDTITSKVPTDREDSQRIDELS
ARDKPFDVKCELKFADSDADGD
NT seq 2589 nt   +upstreamnt  +downstreamnt
atgaagatgtgtgcccccgtcagggggctgttcttggccctggtggctgtgtggaggacc
gcggtggcattcgcccctgtgcctcggatcacctgggagcacggagaggtaggtctggtg
aagtttcacgagccaggcatctttaactactcttccttgctgatgagtgaagacaaagac
actctgtatgtgggtgcccgggaagctgtctttgcagtgaatgcgctggacatctctgag
aagcaacatgaggtatactggaaggtctctgaagacaaaaaatccaagtgcgcagagaag
gggaaatcaaagcagacggagtgccttaactacatccgagtgctgcaaccgcttagcagc
acttccctctacgtgtgtgggaccaatgcgttccagcccacctgtgaccacctgaacttg
acctctttcaagtttctggggaaaagcgaagatggcaaaggaagatgccccttcgacccc
gcccatagctacacatccgtcatggtcgggggagagctctactctgggacttcatataat
ttcttgggcagcgaacccatcatctctcgaaactcttcccacagtcccctgaggacagag
tacgccatcccttggctaaacgagcctagcttcgtctttgctgacgtgatccacaagagc
ccagatggtacagaggctgaggatgacaaggtctacttcttctttacggaggtgtccgtg
gagtacgagttcgtcttcaagttgatgatcccgcgagttgccagggtgtgcaagggcgac
cagggcggcctgcggactttgcaaaaaaagtggacctccttcctaaaggccagactgatc
tgctccaggccagacagtggcctggtcttcaacattcttcaagatgtgtttgtgctgagg
gccccgggcctcaaggaacctgtgttctatgcggtcttcaccccacagctgaacaacgtg
ggtctgtcagcggtctgtgcctacacgctgtccacggtggaggccgtcttctcccgagga
aagtacatgcagagtgccacagtggagcagtctcacaccaagtgggtacgctacaatggc
ccagtgcccactccccggcctggagcgtgtatcgacagtgaggcccgggcagccaactac
accagctccttgaatctcccagacaaaacgctgcagtttgtcaaagaccaccctttgatg
gacgactcggtgacgccaatagacaacaggccgaaactgatcaaaaaagatgtcaactac
acccagatagtggtagacaggacccaggccctggatgggaccttctacgacgtcatgttc
ctcagcacagaccggggcgctctgcataaagctgtcatccttgcaaaagaggtacacgtg
gttgaggagacccaactcttccaggacttcgaaccggtcctgtctctgctgctatcatca
aagaaggggaggaagtttgtctatgctggctccaactcaggagtggtccaagctcccctg
gccttctgcggaaagcacagtagctgtgaagactgtgtgctagcacgggacccctactgc
gcctggagcccagccatcaaggcctgtgttaccttgcaccaggcagagggctctagcagg
ggctggattcaggacatgagtggcgacacgtcctcgtgcctggataagagtaaagaaagt
ttccatcagcattttttcaagcacggcggcacagcagaactcaagtgtttccaaaagtcc
aacctggcccgggtggtgtggaagttccagaacggcgagttgaaggctgtgagtcccaag
tatggctttgtgggcaggaagcacctgctcatctttaacctgtcagacggagacagcggt
gtgtaccagtgcctgtcagaggaaagggtcaggaataaaacggtctcccagctgctcgcc
aagcacatcctggaagtgaaaatggtagctcggatccccccatcacctacctcacagact
gctcagacagaaggtagtaggatcacatccaaaatgcctgtggcgtctacccaggggtcc
tctccccctaccccggctctgtgggcaacctcccccagggctgccaccctacctcccaag
tcctcctccaccggcacgtcctgtgaaccaaaaatggtcatcaacacggtcccacagctc
cactcggagaagacagtgtatctcaagtccagtgacaaccgcctgctcatgtctctcctc
ctcttcctctttgtcctcttcctctgcctcttttcctacaactgctacaagggctacctg
cccggacagtgcttaaagttccgctcagccctgctgctcgcaaagaaaaaacccaagtca
gagttctctgacctggagcagagtgtgaaggagacgctggtagaacctgggagcttctcg
cagcagaacggcgaccagcccaagccagccttggataccggctatgaaaccgagcaggac
actatcaccagcaaggtccccaccgatcgagaggactcgcaacgtatcgacgagctctcc
gccagggacaaaccgtttgatgtcaagtgtgaactcaagtttgcagactcggatgccgac
ggggactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (20)   
   UniProt (1)   
   RefSeq(pep) (19)   
DNA sequence (31)   
   RefSeq(nuc) (19)   
   GenBank (6)   
   EMBL (6)   
Protein domain (7)   
   Pfam (7)   
All databases (68)   

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