KEGG   Rattus norvegicus (rat): 306819
Entry
306819            CDS       T01003                                 
Symbol
Kdm1b
Name
(RefSeq) lysine-specific histone demethylase 2
  KO
K19413  lysine-specific histone demethylase 1B [EC:1.-.-.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    306819 (Kdm1b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    306819 (Kdm1b)
SSDB
Motif
Pfam: Amino_oxidase NAD_binding_8 zf-CW Pyr_redox Pyr_redox_2 DAO SWIRM Thi4 HI0933_like Pyr_redox_3 FAD_binding_3 FAD_oxidored Lycopene_cycl NAD_binding_9 FAD_binding_2 2-Hacid_dh_C GIDA AlaDh_PNT_C NAD_binding_7 Attractin Tsg YjeF_N Shikimate_DH zf-RING_2 IlvN
Other DBs
NCBI-GeneID: 306819
NCBI-ProteinID: NP_001100813
RGD: 1310701
Ensembl: ENSRNOG00000016519
UniProt: A6J705
Position
17:complement(17809232..17850141)
AA seq 824 aa
MAASRGRSKKRSNFELSPDTLPLRSSGRQAKKKAVEITEEDEDGSSEKKYRKCEKAGCTT
AYPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTAWKRVWTSN
GKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPHMARTYRCGMKPNTITKPD
TPDHCSFPEDLRVLEVSNHWWYSMLIQPPLLKDSVAAPLLSAYYPDCVGMSPSCTSTHRA
AVTATATGSASPGEMEPSKAAPASLVLGMNRYFQPFYQPNECGKALCVRPDVMELDELYE
FPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHVIVRGLVRIRCVQEVERILYFM
TRKGLINTGVLTVGAGQHLLPKHYHNKSVLVVGAGPAGLAAARQLHNFGMKVTVLEAKDR
IGGRVWDDKSFKGVVVGRGPQIVNGCINNPVALMCEQLGIRMHKLGERCDLIQEGGRITD
PTIDKRMDFHFNALLDVVSEWRKDKTLLQDVPLGEKIEEIYRAFVKESGIQFSELEGQVL
QFHLSNLEYACGSSLHQVSARSWDHNEFFAQFAGDHTLLTPGYSTIVEKLAEGLDIRLKS
PVQSIDYTGDEVQVTTTDGVVHSAQKVLVTVPLAMLQRGAIQFNPPLSEKKMKAINSLGA
GIIEKIALQFPYRFWDSKVQGADFFGHVPPSASQRGLFAVFYDMGPQQSVLMSVITGEAV
ASLRTMDDKQVLQQCLGVLRELFKEQEIPDPTKYFVTRWNTEPWIQMAYSFVKTFGSGEA
YDIIAEEIQGTVYFAGEATNRHFPQTVTGAYLSGVREASKIAAF
NT seq 2475 nt   +upstreamnt  +downstreamnt
atggcggcatctcgagggcggtcaaagaagagaagcaatttcgagctttctcctgatacc
ctgcctttgaggagctccgggcgacaggcaaagaagaaggctgtagagatcacagaggag
gacgaggatggttcgtcggagaagaagtacagaaagtgtgaaaaggcaggctgtacaacg
gcgtatcctgtgtgctttgcaagcgcttctgagaggtgtgccaagaatggctacacctcc
cgatggtatcacctttcctgtggggaacacttctgcaacgaatgctttgaccactactac
agaagccacaaggatggatacgacaagtacactgcatggaagagagtgtggaccagcaac
ggcaagacggagcccagccccaaggcattcatggcagaccagcagctgccctactgggtt
cagtgcacaaaacccgagtgtagaaagtggaggcagcttaccaaggagatccagcttact
ccacacatggcgaggacgtaccgctgcggcatgaagccaaatactattaccaagcctgac
acccctgatcattgttctttccccgaggatctaagagtgctggaagtctccaaccactgg
tggtactccatgctcatccagcctccattgctgaaggacagtgtggcagccccgctgctc
tctgcctactacccggactgcgtgggcatgagcccctcctgtaccagtacacatcgtgcc
gccgtcacagccactgccaccggcagtgccagcccaggggagatggagccctccaaggca
gcccccgcttcgctcgttctaggcatgaaccggtatttccagccgttctaccagcccaac
gagtgcggcaaggccctgtgtgtgcggccagatgtgatggaactggatgagctctatgag
ttcccagagtactctcgggaccccaccatgtacctggctttgagaaacctcatcctcgct
ctgtggtatacaaactgcaaagaagctctcaccccacagaagtgcattccccatgtcatc
gtccggggccttgtacgcatccgatgtgttcaggaagtggagaggattctttatttcatg
acaaggaaaggcctcatcaacacgggagttctcaccgtgggagccggccagcatcttctt
cctaaacactaccataataaatctgttctggttgttggggctggtccagcaggcttagca
gctgctaggcaactacataactttgggatgaaggtgactgtcctggaagccaaagaccga
atcggaggccgtgtctgggatgacaagtcctttaaaggcgtggtagtaggaagaggaccc
cagattgtcaatggctgtattaataacccagtagcactgatgtgtgagcaacttggcatc
cgcatgcataagttgggagagagatgtgacttaattcaggaaggtggacggataactgac
cccactattgacaagcgcatggattttcattttaatgccctcttggatgttgtctctgag
tggaggaaggataagactctgctccaagatgtccctttaggagaaaagatagaggagatc
taccgagccttcgtgaaggagtctggcatccagttcagtgagctggagggacaggtgctg
cagttccacctgagtaacctggagtatgcgtgtggcagcagcctgcaccaggtgtctgct
cgctcctgggatcacaatgaattcttcgcccagtttgctggtgaccataccctcctaact
ccaggctactccacgatcgttgagaaactggctgaagggctagacattagactcaagtct
ccagtgcagagcatagattacactggagatgaagtgcaggtgaccacgacagatggcgtg
gtgcattccgcacaaaaggtattagtcaccgtgccattggccatgctacagagaggtgcc
atccagtttaacccaccgttgtcagagaaaaagatgaaggccatcaacagcttgggggca
ggcatcattgaaaagatcgccttgcagtttccatatagattttgggacagtaaagttcaa
ggtgctgacttttttggccacgttcctcccagtgccagccaacgagggctcttcgctgtg
ttctatgacatgggcccccagcagagtgtactgatgtcggtgatcacaggggaggcagtg
gcatccctcaggaccatggatgacaagcaggtgctgcagcagtgcctgggcgtccttcgg
gagctgttcaaggagcaggagatcccagatcccacaaagtattttgtcacacggtggaac
acagagccatggatccagatggcctatagctttgtgaagaccttcggaagtggcgaggcc
tatgacattattgctgaagaaatacaaggaactgtttactttgctggtgaggcaacaaac
aggcatttcccacaaactgttactggagcatatttgagtggtgttcgagaagcgagcaag
atcgcagccttttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (25)   
   Pfam (25)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system