KEGG   Rattus norvegicus (rat): 307305
Entry
307305            CDS       T01003                                 
Symbol
Prdm6
Name
(RefSeq) putative histone-lysine N-methyltransferase PRDM6 isoform X1
  KO
K20795  [histone H4]-lysine20 N-methyltransferase PRDM6 [EC:2.1.1.361]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno00310  Lysine degradation
rno01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rno00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    307305 (Prdm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    307305 (Prdm6)
   03036 Chromosome and associated proteins [BR:rno03036]
    307305 (Prdm6)
Enzymes [BR:rno01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.361  [histone H4]-lysine20 N-methyltransferase
     307305 (Prdm6)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    307305 (Prdm6)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     307305 (Prdm6)
SSDB
Motif
Pfam: PRDM2_PR zf-C2H2 SET zf-H2C2_2 zf-C2H2_4 Zap1_zf1 zf-C2H2_jaz
Other DBs
NCBI-GeneID: 307305
NCBI-ProteinID: XP_008770411
RGD: 1559594
Ensembl: ENSRNOG00000030486
Position
18:49102290..49206763
AA seq 609 aa
MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGGGGPLKGSGAALALGAPQSLQPPLPPPPP
ERAEPPPDSLRPRPASLSSVSSTPAPSSTSASSASSCAAAAAAAAAALAGLSALPVSQMP
VFAPLAAAAVAAEPLPPKDLCLGASSGPGPAKCGGGGSVGDGRGVPRFRCSAEELDYYLY
GQQRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELP
EWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQTGAVRNTQHL
WEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACVDIPRGT
ELLVWYNDSYTSFFGIPLQCIAQDENLNVPSTVMEAMCRQDSLQQPFNKSSKLSPSGQQR
SVVFPQTPCSRNFSLLDKSGPIEAGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQ
CFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRA
FAGATTLNNHIRTHTGEKPFKKLGTFCLLKRLEDFPHVCVRDVPFKAVTSVPVPREGTRL
QFRVKWQLS
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgctgaagccgggggaccccggcggctcggccttcctcaaagtggacccagcttacctg
cagcactggcagcaactcttcccgcatggaggaggcggcggcccgctcaaaggcagcggc
gccgcgctcgccctgggcgcgccccagtccctgcagccgccgctaccgccgccgcctcct
gagcgcgccgagcctccaccggacagcctgcggccgcggcctgcctcgctctcgtcagtc
tcatccaccccggctccttcctccacctctgcctcttctgcctcctcctgcgctgctgcc
gccgccgcggccgccgccgcgctggcgggtctctcggccctgcccgtgtcgcagatgccg
gtgttcgcgcctctagctgctgctgcggtggccgcggagccgctgcccccaaaggacctg
tgcctcggcgcctcctcgggccccgggccggctaagtgcggcggcggcggcagcgtgggt
gacggccgtggcgtcccacgtttccgctgcagcgccgaggagctggactattacctgtat
gggcagcagcgcatggaaatcatcccgctcaaccagcacaccagcgaccccaacaatcgt
tgcgacatgtgcgcggacaaccgcaacggggagtgccccatgcacgggccgctgcactcg
ctgcgccggcttgtgggcaccagcagcgcggcggccgctgcacccccgccggagctgccc
gagtggctacgggacctgccgcgggaggtatgcctgtgcaccagcaccgtgccaggcctg
gcgtacggcatctgtgccgcacagaggatccagcagggcacctggattgggcccttccag
ggcgtgctcctgcccccggagaaagtgcagaccggcgcagtgaggaacacgcagcacctc
tgggagatctatgatcaagatgggacacttcagcactttattgatggtggggagcctagt
aagtcgagctggatgaggtatatccgatgtgcaaggcactgtggagaacagaatctaaca
gtagttcagtacaggtcgaatatattctaccgagcctgtgtagatattcccaggggcacc
gagcttctggtgtggtacaatgacagctatacgtctttctttgggattcctttacaatgc
attgcccaggatgaaaacttgaatgtcccttccacggtaatggaagccatgtgccgacaa
gattccctgcagcagcccttcaacaagagcagcaagctttctccctcgggccagcagcgc
tccgtggttttcccacagactccctgcagcaggaatttctctctgttggataaatctggg
cccatcgaggcaggatttaaccaaatcaacgtgaagaatcagagggtcctggcgagccca
acctctaccagccagctgcactcggagttcagcgactggcacctctggaagtgcggccag
tgctttaagactttcacgcagcgcattctcctgcagatgcacgtgtgtacgcagaaccct
gacagaccctaccagtgtggccactgctcgcagtccttttcccagccatcagaactgagg
aaccacgtagtcactcactccagtgaccggcctttcaagtgtggctactgtggccgtgcc
tttgctggggccaccaccctcaacaaccacatccggacccacactggagaaaagcccttc
aagaagttggggactttctgtttgctgaagcgtttggaagactttccacatgtatgtgtc
cgtgatgttcccttcaaggctgtgacatcagtgcccgtgccaagggaaggcacaagattg
caattcagggttaaatggcagctcagctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (7)   
   Pfam (7)   
All databases (34)   

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