KEGG   Rattus norvegicus (rat): 307309
Entry
307309            CDS       T01003                                 
Symbol
Sncaip
Name
(RefSeq) synphilin-1
  KO
K04558  synphilin-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno05012  Parkinson disease
rno05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:rno00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05012 Parkinson disease
    307309 (Sncaip)
   05022 Pathways of neurodegeneration - multiple diseases
    307309 (Sncaip)
SSDB
Motif
Pfam: SNCAIP_SNCA_bd Ank_2 Ank_4 Ank Ank_5 Ank_3
Other DBs
NCBI-GeneID: 307309
NCBI-ProteinID: NP_001100849
RGD: 1309283
Ensembl: ENSRNOG00000018254
UniProt: A6IX21 D3ZWQ5
Position
18:48402164..48542246
AA seq 963 aa
MEAPEYLDLDEIDFSDDISYSVTSLKTIPALCRRCDSQNEDRPVSSSSWNCGVSTLITNP
QKPTGIADVYSKFRPVKRVSPLKHQPETLESNESDDQKNNTVEYQKGGETDQGPQPEELS
PEDGVGGLPGKGSEPSQALGELEHYDLDMDEILDVPYIKSSQQLAPLTKVTSEKRILGLC
TTVNGLSAKTCPIVSAETSTPNMAPLCVLSPVKSPHLRKVPSVLRDQHKLPAEESENSPA
PGKCGPAFESENHSKDFLNKVFSDPHSRKAEKSGPDCKLRPFRLQTSAAGAKPEEQVNGV
SWASAQGAEERTEYLQKVRSILNIVNEGQISLLPHLAADNLDKIHDENGNNLLHVAASKG
HAECLQHLTSLMGEDCLNERNAEQLTPAGLAIKNGQLECVRWMVSETEAIAELSCSKDFP
SLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDQEGNSAVHVASQHGYLGCIQTLVEYGA
NVTMQNHAGEKPSQSAERHGHTLCSRYLVVVETCMSLASQVVKLTKQLKEQTVERVTLQS
QLQQLLEAQKSEGKSLPSSPSSPSSPASRKSQWKILDADDESTGKSKLGTQEGIQVLGNL
SSRARTKGKDEDSDKILRQLLGKEISENVCTQEKLSLEFQDAQVSSRNSKKIPLEKRELK
LARLRQLMQRSLSESDTDSNNSEDPKNTPVKRVDRPRPQPIVESVENMDSAESLHLMIKK
HSVASGRRFPFGMKASKSLDGHSPSPTSESSEPDLDSHCPSLGMTPPTQPSTEATQCSPD
SATAQKVATSPKSALKSPSSKRRTSQNSKLRVTFEEPVVQMEQTSLELNGEKDKERGRAP
QRTSESGEQMKRPFGTFRSIMESLSGNQNNNNNYQPASQLKTCTLPLTSLGRKTADAKGN
PVSPASKGKNKAAMYSSCIHLPSNALVEEHLRDYARLNDIKRNTKKTYNVKHIAEPEPKE
LFL
NT seq 2892 nt   +upstreamnt  +downstreamnt
atggaagcccctgaatatcttgatctggatgaaatcgactttagtgatgacatttcttat
tcagtcacatctctcaagaccatcccagcactgtgcagaagatgtgactcacagaacgaa
gacagaccagtttctagctctagctggaattgtggtgtctcaactctcattacaaacccg
caaaagcccactggaatcgctgatgtatacagtaagttccgcccggtgaagcgagtttct
ccactgaaacatcagccagagactctggagagcaatgaaagtgacgaccagaagaacaat
acagtggaataccagaaagggggggagactgaccagggcccccagcctgaggagctcagc
cctgaagatggagtcggaggcttgccaggcaagggctcagagcccagccaggcactgggt
gagctggagcactatgacctcgacatggatgagattctggatgtgccttacattaaatcc
agtcaacagctggccccgctcaccaaggtgacttcagaaaaaaggattttgggtttatgc
acaactgtcaatggcctctctgccaaaacctgccctattgtaagcgctgagacctccaca
cccaacatggctccattgtgtgttctttctcctgtgaaaagccctcacttacggaaagta
cccagtgtcctccgggaccagcacaagctccctgcggaagaatcggagaactcacccgct
cctggtaaatgcggccctgcatttgaatcagaaaaccacagtaaggacttcttaaacaag
gtctttagtgatccccatagtcggaaagctgagaagtctgggccagactgcaagctcagg
cccttccgcctgcagacctcggcagcaggagccaaaccagaggagcaggtcaacggcgtg
agctgggccagtgcccaaggcgcagaagaaaggactgagtacctgcagaaagtaagaagc
atactgaacattgtgaacgaagggcagatatcgctcttgccacacctagctgcagataat
ctggacaaaattcacgacgagaacggaaacaatctgttacacgttgctgcatcaaagggc
catgcggaatgtctgcagcacctcacgtcgctgatgggcgaagactgtctgaatgaacgg
aacgcagagcaactgactccagcgggcctggccatcaagaatggtcagctggagtgtgta
cgctggatggtgagtgagacggaagccattgcggaactgagttgttccaaggatttccca
agcctaattcattacgcaggctgctatgggcaggaaaagattcttctgtggcttcttcag
ttcatgcaagaacaaggcatctcattggatgaagtagatcaggaaggcaacagtgctgtt
catgtcgcttcacaacatggctaccttggatgcatacagaccctggtggagtatggagca
aatgttacgatgcagaaccacgctggggaaaagccctcccagagtgccgagcggcacggc
cacaccctatgttcccggtacctcgtggtggtagagacctgtatgtcactggcctcacaa
gtggtaaagttgaccaagcagctaaaggagcagacagtggagcgcgtcacactgcagagt
caactccaacaacttctggaagcccagaaatcagagggcaagtccctcccatcttcaccc
agttcaccctcctcaccagcttctagaaagtcccagtggaaaattctagatgcagatgac
gagtctacaggcaaaagcaaactgggaacccaggagggaatacaagtccttggaaactta
tccagcagggctaggaccaaaggaaaagacgaagactctgataaaatcctacgtcagtta
ttggggaaagaaatatcagagaatgtctgcacccaggaaaagctgtcattggaattccag
gatgctcaggtatcctctaggaattcgaaaaaaatacctctagagaagagggaactgaag
ctagctagactgcggcagctgatgcagagatctttgagtgaatctgacacggattcaaac
aactctgaggaccccaaaaatactcctgtgaaaagagtggacagacctagaccacagccc
attgtggaaagtgtggagaatatggacagtgcagaaagcttacacctgatgataaagaaa
cactctgtggcatcaggacgcaggtttccttttggtatgaaggcctccaaatccctggat
gggcacagcccatctcccacttcagagagcagtgaaccagatttggactcccattgcccg
agcctgggaatgactcctccaacccaaccttctacagaagccactcagtgcagtcctgac
agtgccactgcccagaaagttgctacaagccccaagagtgccctcaagtctccatcatcc
aagcgccggacatcccaaaactcaaaactgagagtgacctttgaggagcctgttgtgcaa
atggagcaaactagccttgaactaaatggagaaaaagacaaagagaggggcagggccccc
cagaggactagtgagtcaggagaacaaatgaaaaggccttttggaaccttccgatccatc
atggagagtttaagtggtaatcagaacaacaataataactaccagccagccagccagctg
aagacctgcacactacccttgacgtcacttggaaggaagacagcagatgccaagggaaac
cctgtgagccctgctagcaaaggaaagaataaggcagcgatgtacagcagctgcattcat
cttccctctaatgcgctggtcgaagagcatctgcgtgattatgcacggcttaatgacatc
aaaagaaacacgaagaaaacttacaacgtaaagcacattgctgaaccagagccaaaggaa
ctcttcttataa

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   UniProt (2)   
   RefSeq(pep) (9)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (6)   
   Pfam (6)   
All databases (36)   

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