KEGG   Rattus norvegicus (rat): 308023
Entry
308023            CDS       T01003                                 
Symbol
Ssx2ip
Name
(RefSeq) afadin- and alpha-actinin-binding protein
  KO
K06085  synovial sarcoma, X breakpoint 2 interacting protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04520  Adherens junction
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    308023 (Ssx2ip)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    308023 (Ssx2ip)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation proteins
   Pericentriolar materials (PCM)
    Centriolar satellite
     308023 (Ssx2ip)
SSDB
Motif
Pfam: ADIP HEPN_RES_NTD1 RNaseH_C
Other DBs
NCBI-GeneID: 308023
NCBI-ProteinID: NP_783187
RGD: 708490
Ensembl: ENSRNOG00000015425
Vega: OTTRNOG00000002293
UniProt: Q8CGZ2 A6HWD4
Position
2:237958286..237991026
AA seq 613 aa
MGDWMTVTDPVLCTENKNLSQYTSETKMSPSSLYSQQVLCSATPLSKNVHGVFSAFCTGE
NIEQSISYLDQELTTFGFPSLYEESKSKEAKRELSIVALLNCMNELLVLQRKNLLAQESV
ETQNLKLGSDMDHLQSCYAKLKEQLEASRREMISLQERDRQLQCKNRNLHQLLKNEKEEV
QKLQNIIASRATQYNHDVKRKEREYNKLKERLHQLVMNKKDKNIAMDVLNYVGRVDGKRG
SWRTDKTEARNEDEMYKILLNDYEYRQKQILLENAELKKVLQQMKKEMISLLSPQKKKPR
ERAEDSTGTVVISDVEDDAGELSRDGVWSLSCDTVREQLTNSIRKQWRILKSHVEKLDNQ
ASKVHSEGFHEEDVISRQDHEQETEKLELEIERCKEMIKAQQQLLQQQLATACDDDTTSL
LRDCYLLEEKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGLERKAFEEERASWVKQQF
LNMTTFDHQNSENVKLFSAFSGSSDPDNLIVHPRPRQKKPHSVANGVPACTSKLAKSLPT
SPSDFCPSRSCVSEHSPVSALTVTPEETKPNEVGRESTDQKWSVVSRPSSREGCYGGCSS
AYTSSHVERDDLP
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgggagattggatgactgttacagatccagttctgtgtacagaaaacaaaaatctctct
caatatacctcagaaacaaagatgtctccgtcaagtttatactcgcagcaagtactgtgc
tctgcaacacctttatccaagaatgtgcatggtgttttcagtgccttctgcacaggagag
aacatcgaacagagtatttcgtatcttgatcaggaactgactaccttcggtttcccttcc
ttgtatgaagaatccaaaagtaaggaggcgaagcgagagttaagtatagttgctcttctg
aactgcatgaatgagctgcttgtgcttcagcggaagaacctcctggcccaagaaagcgtg
gagacacagaatctgaagctgggcagtgacatggaccacctgcagagctgctacgccaaa
cttaaggaacagttggaggcctccaggcgagagatgatcagccttcaggagagagacaga
cagctacagtgcaaaaacaggaatttgcatcagctcctgaaaaacgagaaagaagaggta
caaaaattacaaaatatcatagccagtcgggctactcagtataatcatgatgtgaagaga
aaggagcgggagtacaataaactgaaggagcgtctgcatcagcttgttatgaacaagaag
gataaaaatatagccatggacgttttaaattacgtgggccgagtggatggaaagcgaggc
tcctggaggactgataaaacagaagccaggaatgaagatgaaatgtacaaaattctgctg
aatgattatgagtaccgccagaagcagatcctgctggagaatgcggagctgaagaaggtc
ctccagcagatgaagaaagagatgatctctctcctttctcctcaaaagaagaaacccaga
gaaagagcagaggacagcacaggcactgttgtcatctccgatgtagaagacgacgctggg
gagctgagcagagatggtgtgtggagcctttcctgtgacactgtcagggagcagcttaca
aacagcatcaggaagcagtggagaattctgaaaagccatgtggaaaaacttgataaccaa
gcttcaaaggtacactcagagggctttcatgaagaggacgtcatctcacgacaagaccat
gagcaagagactgagaaactggagctggagattgagcggtgtaaagagatgatcaaggct
cagcagcagctcttacagcaacagctggccactgcgtgtgatgacgacaccacctcactg
ttgcgagactgttacttgcttgaagaaaaggaacgccttaaagaagagtggtcccttttt
aaagagcaaaaaaagaattttgagagagaaagacgaagctttacagaagctgctattcgc
ttggggttggagagaaaggcgtttgaggaagagcgagccagctgggtgaagcagcagttt
ttaaacatgacgacctttgatcaccagaactcagaaaatgtgaaacttttcagtgccttt
tcaggaagttctgatccagacaatcttatagtccacccacggccacggcaaaagaagcca
cacagtgtcgctaatggggtaccagcttgcacatccaaactggctaagtctcttccgacc
tcaccttcagacttctgcccgtctcgctcatgtgtgtctgagcacagtcccgtcagtgcg
ctgactgtgactcctgaagaaaccaaaccgaatgaggttggaagagaaagtacggaccag
aagtggagcgtggtgtccagacccagctcccgggagggttgctacggtggatgctcctcg
gcctacacaagctcccacgtggaacgagatgacttaccatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (11)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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