KEGG   Rattus norvegicus (rat): 308406
Entry
308406            CDS       T01003                                 
Symbol
Six5
Name
(RefSeq) homeobox protein SIX5
  KO
K19474  homeobox protein SIX5
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    308406 (Six5)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Helix-turn-helix
   Homeo domain SINE
    308406 (Six5)
SSDB
Motif
Pfam: SIX1_SD Homeodomain Homeobox_KN
Other DBs
NCBI-GeneID: 308406
NCBI-ProteinID: NP_001359006
RGD: 1305040
Ensembl: ENSRNOG00000060146
Position
1:87868859..87873929
AA seq 720 aa
MATSPAEPSAGPAAQGEAAAATEEEEEEARQLLQTLQAAEGEAAAAGAGEGAAADSGSPS
GPGSPRETGTEAPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLR
ARALVAFQRGEYAELYQLLESRPFPAAHHAFLQDLYLRARYHEAERARGRALGAVDKYRL
RKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLSLTQVSNW
FKNRRQRDRTGTGGGAPCKSESDGNPTTEDESSRSPEDLERGVASVAAEAPTQSSIFLAG
ATPSATCPASSSILVNGSFLAASSPPAVLLNGSPVIINSLTLGEGSSLGPLLLTGGGGTP
QPQPSPQGVSETKTSLVLDPQTGEVRLDEAQSEAPEAKGVHGTTPGEEIPGTLPQVVPGP
PPASTFPLTPGAVPSVAAPQVVPLSPSSGYPTGLSPTSPLLNLPQVVPTSQVVTLPQAVG
PLQLLAAGPGSPVKVAATAGPTNVHLINSSVGVTALQLPSSATPGNLLLANPVSGSPIVT
GVAVQQGRILLTATFPTRMLVSQVLPPAPSLALPLKQEPAITVPEGALPVGPSPTLPEGH
TLGPVSTQPLPPAPAVTSATSLPFSPDSSGLLSSFSAPLPEGLMLSPAAVPVWPAGLELS
TGVEGLGTQATHTVLRLPDPDHQGLLLGATAGTEVDEGLEAEAKVLTQLQSVPVEEPLEL
NT seq 2163 nt   +upstreamnt  +downstreamnt
atggctacctcgcctgccgagccgagcgcggggccggcggctcagggggaggcggcggcg
gcgaccgaggaagaggaggaagaagcgcgccagcttctgcagactcttcaggcagccgag
ggggaggcggcggcggccggggcgggagagggggcggcggcggattctgggtccccgagc
ggcccagggtctccacgcgagaccgggaccgaggcgcccactggccttcgcttctcgccc
gagcaggtggcatgcgtgtgcgaggcgctgctgcaggcgggccacgccggccgcttgagc
cgcttcctgggcgcgctgcccccggccgagcgtctacgtggcagcgatccggtgctgcgc
gcgcgggccctagtggccttccagcggggtgaatatgccgagctctaccagctccttgag
agccgccctttccccgccgcccaccacgccttcctgcaggacctctacctgcgcgcgcgc
taccacgaggccgagcgggcccgtggccgtgcgctgggcgcggtggacaaataccggctg
cgcaagaagttccctctgcccaagaccatctgggatggcgaggagacggtctattgcttc
aaggagcgctcgcgagcagcgctcaaggcctgctaccgcggcaaccgctatcccacgcca
gacgagaagcgccgcctggccacgctcaccggcctctcacttacacaggtcagcaactgg
ttcaagaaccggcgacagcgcgaccgtactgggaccggcggtggagcgccctgcaaaagc
gagtctgacgggaaccccactacggaggatgagtccagccgcagtccggaggacctggag
aggggtgtggcctccgtggctgctgaggctcccacccagagttccatcttcctggcaggg
gccaccccttctgccacatgccctgcctcctcttctatcctagtgaacgggagcttcctg
gcagccagcagtcccccagcagtgctcctcaatggcagcccagtcatcatcaatagcttg
accctaggagagggctccagcttggggcctctgctactcacagggggagggggtacccct
caaccacagcccagtccccaaggggtcagtgagaccaagacttccctggtcctggaccct
cagacaggagaggttcgactggatgaggctcagtctgaggcccctgaggccaaaggggtt
catggaactactcctggagaggaaatcccaggaaccctgccccaagtagtcccaggcccc
ccacctgcctccaccttccctttgacccccggagctgtgccctctgtggctgctcctcag
gttgtaccactctccccttcttctgggtacccaacaggcctgagccccacctccccactg
ctgaacttgccccaggtggtgcccacctctcaggtggtaaccctgcctcaggctgtggga
cctctccagctgttagcagctggaccaggcagtcctgtgaaggtggcagctacagcaggg
cctaccaatgtgcacctgataaactctagtgtgggagtgactgcgctgcaacttccctca
tccgctactccaggaaacttgctcctggccaaccctgtgtctggcagccccattgtcact
ggggtagctgtgcagcagggcaggatcctcctcacggccaccttccccacccgcatgctc
gtctcccaggtcctgcctcctgctcccagtctagccctgcccctgaagcaagagccagct
atcacagtgcctgaaggagccctcccagtgggccccagccccaccctcccagagggtcac
actctggggccagtctctactcagccactgccacctgctcctgctgtcacctctgccacc
agcctgcctttctccccagactcctctggcctgctttccagcttctcagcacccctacct
gaaggtctgatgctgtcacctgcggctgtgccagtttggccagcagggctggaactgagc
acaggagtagaggggctggggacacaggccacccatactgtgctgaggctaccagaccct
gaccaccaggggctgctcctgggggccacagcagggactgaggttgacgagggcctagaa
gctgaggccaaggtcctgacccagctgcagtccgtgcctgtggaggagcccttggaactg
taa

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