KEGG   Rattus norvegicus (rat): 308415
Entry
308415            CDS       T01003                                 
Symbol
Ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    308415 (Ercc2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    308415 (Ercc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    308415 (Ercc2)
   03400 DNA repair and recombination proteins [BR:rno03400]
    308415 (Ercc2)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     308415 (Ercc2)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     308415 (Ercc2)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     308415 (Ercc2)
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 ResIII DEAD SesA
Other DBs
NCBI-GeneID: 308415
NCBI-ProteinID: NP_001166280
RGD: 1309109
Ensembl: ENSRNOG00000017753
UniProt: A6J8M9 D3ZEG9
Position
1:88161342..88175102
AA seq 760 aa
MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ
RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE
VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDL
KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID
NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE
TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG
LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP
FDDRTPTITNPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT
FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT
SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYF
LRQMAQPFHREDQLGLSLLSLEQLQSEETLQRIEQIAQQL
NT seq 2283 nt   +upstreamnt  +downstreamnt
atgaagctcaacgtggatgggctgctggtctacttcccgtacgactacatctacccggag
cagttctcctacatgctggagctcaagcgcacgctcgacgccaagggtcatggagtcctg
gagatgccctcaggcactgggaagacagtgtccctgttggccctgatcgtggcctatcaa
cgggcttatccactggaggtgaccaaactcatctactgctcacggaccgtgccggagatt
gagaaggtcatagaagagcttcgtaagctgctcagtttctacgagcagcaggagggtgag
aagctgccattcttaggactggctctgagctcgagaaagaacctgtgcattcatcccgag
gtgacaccactgcgcttcgggaaggacgttgatgggaagtgtcacagcctgacagcgtca
tacgtgcgggcacagtaccagcaggatgccagcctacctcactgccgtttctatgaggaa
tttgacacccatggacgccaggtgcccctccctgcgggcatctacaacctggatgacttg
aaggccctggggcagcggcagggctggtgcccctacttcctggctcgatactcgatcctg
catgccaacgtggtggtttacagctaccactacctcctggaccccaagatcgcagacctg
gtatccaaagagctggcccgcaaggccgttgtggtcttcgatgaagcccacaatatcgac
aatgtctgcatcgactccatgagtgtcaacctcacccgcaggactctggaccgttgccaa
agcaacttagacaccctgcagaagacggtgctcaggatcaaggagacagatgagcagcgg
ctacgagatgagtaccggcgcctggtggagggcctgcgggaggccagtgcagctcgggag
acagatgcccacctggccaaccctgtgctgcccgatgaggtgctgcaggaggccgtgcca
ggctccatccgcaccgccgagcacttcctgggcttcctgcggcggctgctggagtatgtc
aagtggcggctgcgtgtgcagcatgtggtgcaggagagtccacctgcctttctgagcggc
ctggcccagcgtgtgtgcatccagcgcaagcccctcaggttctgtgccgagcgcctgcgc
tccctgctgcacaccctggagattgctgatctggccgacttctccccactcacactcctt
gccaacttcgccactctcgtcagcacttatgccaagggcttcaccattatcattgaaccc
tttgacgacaggacccccaccatcaccaaccccattctgcacttcagctgtatggacgcc
tccttggccatcaagcctgtgtttgaacgcttccagtctgtcatcatcacgtccgggaca
ctgtctccactggacatctaccccaagatcctggacttccacccggttacaatggcaacc
ttcaccatgacactggcccgagtctgcctctgcccaatgatcattggccgtggtaatgac
caggtagcaatcagttccaaatttgagaccagagaagatatcgctgtaatccgcaactat
ggcaacctcctgctggagatgtctgccgtggtccctgatggcatcgtggccttcttcacc
agctaccagtacatggaaagcactgtagcctcctggtatgagcagggcatccttgaaaac
atccagagaaacaaactgctcttcattgagacccaggatggggctgagaccagtgtggcc
ctggagaagtaccaagaggcatgtgagaatggccgcggggccattctgctctcagtggct
cggggcaaagtatcagaagggattgactttgtgcaccactatgggcgggccgtgatcatg
tttggcgtcccctatgtttacacccagagccgaattctcaaggccaggctagagtatctg
cgggaccagttccagatccgagagaatgacttcctcacctttgatgccatgcgccatgca
gcgcagtgtgtgggtcgcgctatcaggggcaagacagactatggactcatggtctttgct
gacaagcggtttgctcgagctgacaagcgtgggaagctgcctcgatggatccaggagcat
ctgactgactccaacctcaacctgaccgtggatgagggtgtacaggtcgccaagtacttc
ctgcggcagatggcacagcccttccaccgggaggatcagttgggtctgtcactgctcagt
ctggagcagctgcagtccgaggaaacactacagcgaattgagcagattgcacagcagctc
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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