KEGG   Rattus norvegicus (rat): 308576
Entry
308576            CDS       T01003                                 
Symbol
Pnkp
Name
(RefSeq) bifunctional polynucleotide phosphatase/kinase
  KO
K08073  bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    308576 (Pnkp)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    308576 (Pnkp)
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    308576 (Pnkp)
Enzymes [BR:rno01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     308576 (Pnkp)
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.32  polynucleotide 3'-phosphatase
     308576 (Pnkp)
Protein phosphatases and associated proteins [BR:rno01009]
 HAD phosphatases
  Other HAD phosphatases
   308576 (Pnkp)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     308576 (Pnkp)
SSDB
Motif
Pfam: PNK3P FHA_2 AAA_33 HAD Zeta_toxin Hydrolase_6 Viral_helicase1 AAA_17
Other DBs
NCBI-GeneID: 308576
NCBI-ProteinID: NP_001004259
RGD: 1303331
Ensembl: ENSRNOG00000020318
UniProt: Q6AXV0
Position
1:104476801..104483409
AA seq 522 aa
MSELGSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVMDRKCSRNQVELIADPETR
TVAVKQLGVNPSTVGVQELKPGVSGSLSVGDVLYLVNGLYPLTLRWEEISTPGSPPDTPP
GNPVDPEEGKDTEPQKKRMRKSSPGWESFKQLLVFTASGVKPRGKVAAFDLDGTLITTRS
GKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVILTNQMGIGRGKLPAEVFKAKVEAVLE
KLGVPFQVLVATHAGLNRKPVSGMWDHLQEKGNEGIPISIGDSVFVGDAAGRPANWAPGK
KKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFDPRTISSAGPLYLPESSFLL
SPNPEVVVAVGFPGAGKSTFIQKHLVSAGYVHVNRDTLGSWQRCVNSCQAALRQGKQVVI
DNTNPDIQSRARYIQCAKDAGVPCRCFSFCATIEQARHNNRFREMTDPSHAPVSDMVMFS
YRKQFEPPTLAEGFLEILQVPFRLQEHLDPALQRLYCQFSEG
NT seq 1569 nt   +upstreamnt  +downstreamnt
atgtcagagcttggatccaggggccgcctgtggctccagagccccaccggtgggccaccc
cctatattcctgccgtcggatggccaagccctggttctcggtcggggaccccttacccaa
gtgatggaccggaagtgctcccgaaaccaagtggagctgattgcagaccctgaaacccgg
acagtggcagtgaaacagctgggtgttaacccatcaactgttggggtccaggagttgaag
ccaggggtgtctggctctctaagcgtgggggatgtcctttatctggttaatggcctatat
cccctgaccctgcgctgggaagagatcagcacaccaggatccccgccagacactccacca
ggcaatcctgtggatccagaggagggaaaggatactgagcctcagaaaaagcgaatgcgg
aaatcctcccctggctgggagagctttaagcagttactggtgttcacagcgtctggagtg
aagccccggggcaaggtggctgcctttgacctagatgggaccctcatcaccacccgctct
ggaaaggtcttccccactagccctagtgactggaggattctgtacccagagattccaaag
aagctccaggagctggctgctgagggctacaagctggtaattctcaccaaccaaatgggc
atcgggagaggcaagctgccagcagaggtgttcaaggccaaggtggaagctgtattggag
aaactaggggtcccatttcaggtgctggtggcaacgcatgcaggtctaaaccgaaagcca
gtgagtggcatgtgggaccatctgcaggagaagggcaacgagggcatccccatctccatc
ggggacagtgtcttcgtgggagatgcagcagggcgcccagccaactgggccccagggaag
aagaaaaaggatttctcctgtgcagaccgcctgttcgccctcaatgttggcctacccttt
gccactcctgaagagttcttcctcaaatggccagcagcccgctttgagcttccagctttt
gacccgaggaccatctccagtgctggacccctctacctcccagagtccagtttcctcctg
agccccaacccagaggtggtggtcgcagtaggattccctggggccggcaagtccactttc
atccagaagcacctggtatcggctggatatgtccatgtgaacagagacacgctgggctca
tggcagcgctgtgtgaactcatgccaggccgcactgaggcaggggaagcaagtcgtgatt
gataacaccaacccagacatccaaagtcgggctaggtacatccagtgtgccaaagatgct
ggtgtgccctgccgctgcttcagcttctgtgccacaatagagcaggcacgccacaacaac
aggttccgtgagatgaccgacccttcacatgcgccggtatcagacatggtcatgtttagc
tacaggaagcagtttgagccgcccacactggctgaaggcttcctggagatccttcaggtc
ccattccggttacaggagcatctggaccctgcgctgcagcgactatactgccagttttcc
gagggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (35)   

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