KEGG   Rattus norvegicus (rat): 308653
Entry
308653            CDS       T01003                                 
Symbol
Nxf2
Name
(RefSeq) nuclear RNA export factor 2 isoform X1
  KO
K14284  nuclear RNA export factor
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03008  Ribosome biogenesis in eukaryotes
rno03013  Nucleocytoplasmic transport
rno03015  mRNA surveillance pathway
rno05014  Amyotrophic lateral sclerosis
rno05164  Influenza A
rno05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    308653 (Nxf2)
   03015 mRNA surveillance pathway
    308653 (Nxf2)
   03008 Ribosome biogenesis in eukaryotes
    308653 (Nxf2)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    308653 (Nxf2)
   05168 Herpes simplex virus 1 infection
    308653 (Nxf2)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    308653 (Nxf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    308653 (Nxf2)
   03009 Ribosome biogenesis [BR:rno03009]
    308653 (Nxf2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     308653 (Nxf2)
   mRNA cycle factors
    Stress granule specific factors
     308653 (Nxf2)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    308653 (Nxf2)
SSDB
Motif
Pfam: Tap-RNA_bind TAP_C LRR_4 NTF2 LRR_8
Other DBs
NCBI-GeneID: 308653
NCBI-ProteinID: XP_002730329
RGD: 1559530
Ensembl: ENSRNOG00000011729
Position
X:complement(102429194..102450348)
AA seq 619 aa
MWSSPDKDPEDRPSMIVLKNTNSETQKHRYDLPYKRSETHCHSEYKMSHRRGFQGRKRGA
NYIWHKFDRRNNHFNYPGTPYAVGLKRRKERYSYEDRYFLTVWNDRKTEECEDLYAERRA
TERWYKVTIPSGRKYEKTWLINSIQKLCTVPFVPVDFHYDKNRARFFVQDAKIASALKDV
NLKICDETSRKISLFVSPSVVPYSVQNKFSSEQMEHLKISIMKRYDASQKALDLEKFRFD
QDLMDKDIDMMLNRRSCMVATLQIIESNIPELLSLNLKNNKLYQLDGLSDMTEKAPQVKI
LNLSRNKLKSIFELEKVKELKLEELWLEGNPFCNCYLDDSEYISAVRDLFPKLLRLDGRE
LIVPTGMDIEAPQLCKKTHNETELIKNLVLRFLKEYYLFYDNGDRLRLLDAYHDQACFSL
SVPFNVSDPDLDNLEEYLKYNRDIKKQQDSNMRVQLLKHTKHDIVTSLSLLPKTQHDLCS
FWVDLCFHSEMMLCFSVNGLFKEVEGKCQGCIRAFTRIFIAIPCSDSRICIMNDELIVRN
ASPKEIQKAFTSSPAPDTSLKPLLSAEQQEMVKSFSVQSGMKLDWSQKCLEDNEWDYTKA
GEAFTALQNEGKIPKEFFK
NT seq 1860 nt   +upstreamnt  +downstreamnt
atgtggtcctctccagataaggatccggaagacaggccttccatgattgttctgaagaac
actaattctgagacacaaaaacaccgatatgatctaccatacaagagatctgagacacac
tgtcattcagaatacaaaatgagtcatcgccgtggttttcaaggaagaaagagaggtgca
aattatatctggcataaatttgacaggaggaacaatcattttaattatcctggtactcca
tatgccgtgggactgaaaaggaggaaagaaagatacagttatgaggaccggtattttctt
actgtgtggaatgatagaaaaactgaggagtgtgaggatctgtatgctgaaaggagagcc
acggagagatggtataaggtcacaattccaagtgggagaaagtatgagaagacatggcta
ataaattcaatccagaaactctgtactgtgcccttcgttcctgttgatttccactatgac
aaaaatcgggcccggttctttgttcaggatgccaagattgcctctgcactgaaggatgtc
aacctcaagatttgtgatgaaacaagcagaaaaatttctctctttgtcagtccttctgtt
gtgccctattctgtgcaaaacaagttttcatcagaacaaatggagcatctaaagatatct
ataatgaaacggtatgacgcctcccagaaagctctggacctcgagaagttccgatttgac
caggacttgatggacaaggatattgacatgatgctgaatcgaagaagctgcatggttgcc
acactacagatcattgaaagcaatatccctgaactgttgtccttgaacttgaaaaacaac
aaattgtaccagctggatgggctatctgacatgacagagaaggcccctcaagttaagatt
ctgaacctctccagaaataaactgaagtcaatctttgagttggagaaggtgaaagagctg
aagctggaagagctgtggctagaagggaaccccttctgcaactgctacttggatgattct
gagtatataagtgctgtacgggacctatttcccaagttgttgcgtctggatggcagggag
ttaatagtaccaacaggaatggacatcgaggccccccagctatgcaagaaaacccataac
gaaactgaactcataaaaaatctagttctacgatttctgaaagagtactacttgttttat
gacaatggagatcgtcttcgtctccttgatgcttaccatgaccaggcctgcttctccctg
tccgttcctttcaatgtcagtgacccagacctggacaacttggaagagtatttaaaatat
aacagagatataaagaaacagcaagactcgaacatgcgagtgcagttgctgaagcacaca
aaacatgacatcgtgacctcgcttagcttgttaccaaaaactcagcatgatctttgctct
ttctgggtggacctgtgtttccactcggaaatgatgctctgtttttctgtcaacggactg
ttcaaggaagtggaaggaaaatgtcaaggctgcatccgtgccttcaccaggatcttcatt
gctatcccctgcagcgattcaagaatttgcatcatgaacgatgagttgattgtgaggaat
gccagtcccaaagagatacaaaaggccttcacatcgtcgcctgcacccgacacttctctc
aagcctttactctctgcagagcagcaggaaatggtgaagtctttctctgtgcaatctgga
atgaaacttgattggtctcagaagtgccttgaagataacgaatgggactacaccaaagcg
ggtgaggccttcactgccctccagaatgagggcaaaatcccaaaggaattcttcaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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