KEGG   Rattus norvegicus (rat): 308709
Entry
308709            CDS       T01003                                 
Symbol
Synm
Name
(RefSeq) synemin
  KO
K10376  desmuslin
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rno04812]
    308709 (Synm)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type VI
     308709 (Synm)
SSDB
Motif
Pfam: Filament DUF3450
Other DBs
NCBI-GeneID: 308709
NCBI-ProteinID: NP_001128330
RGD: 727872
Ensembl: ENSRNOG00000014030
Vega: OTTRNOG00000000921
UniProt: G3V9G5 A6JBT8
Position
1:complement(130743891..130774254)
AA seq 1557 aa
MLSWRLQTSSEKAELQELNARLYEYVCRVRELERENLLLEEELRSRLSREDRWAEDQALY
AEEARSLRQQLDELSWSTALAEGERDALRRELLDLQREGLEASTARGRLDAELEAQRREL
EEALGARAALEALLGRLEAERRDLDAAHERQVRELRARASSLTMHFRARATGPAAPPPRL
RDVHDSYALLVAESWRESMQLYEDEVRELEQALRRGQESRLQAEDEARLCAQEADALRNQ
ALELEQLRARLEDELLRMREEYGMQAEERQRVIDSLEDEKDALTLAMADRLREYQELLQV
KTGLSLEVATYRALLEGESNPEILIWTENIENVPRESRNTSYRYTDSVLQRKNEKNLFPR
RKTPWAAVNHSSTLYSNGPGHLDSQTTTAVGNAARRGFLTSCYSSSATTSQQKPLEKTVS
SQASLRPVIPTHGFLRNTDAQVKTFSHGPKAEGMGDTLTRRATESVITRESYRGHQGNVA
AGAVNSTQSNERTVILGKKLETQATKEQERDRSGVVKLKPEEKMFDSKEKASEERNLRWE
ELTKLDARERESQHLRNEAKGKETLTGRSRKEREVPISLEVSRGSKSEVSTIHLQSSGRK
DSANSREREVKTKETKFHLDGKDTAGSLQSDSTTETIAENIVTTILKQFTQSPGAEENVS
SLPDTKVTYLDRKEFPGDRKTKTEIVMESKLTEDVDVSDEAGLDYLLSKDVKEVGLKGKS
TETVIGEMINLGLKGREGRAKVVNVEIVEEPMSYVGGGKVEFSTPFQVEEVDDVSPSPKG
FIEEEEGEGETHMAFSMHQRQRTNQPQVNVPHVEEVTEAGDSEGEQSYFVSTPDEYPGGH
DREDDGSVYGQIHIEEESTIRYSWQDEIAQGTWRRKARGDTGEEKHMKVLEVPSASLGGA
FGSAHVKEEASGELHAEPTIIEKEIKIPHEFHTSIKGVFSSEPRHQLVEVIGQLEETLPE
RMKEELSALTRQSQGEPGSVSVDVKKVQSSAGGSVTLMAEVNLSQTVDADQLDLEELSRD
EAGEIEKAVESVVRESLTKRSSPVPRSPDREDGEEAPAGGFLFKRWATRELYSPSGEKDD
TDRVFHSSDQRVTQGPVSATVEVTSPTGFVQSHVLEDVSQSVRHVKLGPTEMWRTEQVSY
GGPTSPVVEVSEDFSEAVSSEGASRSVRHVTLGPRQNRVSTEVIFRGSVPTGQETGDTGE
PDPAALSVEADISGSGRMPGSQQAHNEKETPFPGPISGAAQVGSNFSTEGSVGTQTFVRH
LQLGSREGFREEIQFIAPIPDRAEWGEEDSGYTRVSLGRSTSIQHIDIVPQRYQASKQVA
PQTLGFRDSEGVVLVERSAGMTQATHNFTSDREILKKEENTFQRVISGSPPDSVGDTGAE
VTENISRSFRHIQIGPTEEDPSEYIVTSGPLSKTFVLDSSVASPGPGGGADGSSTPCHIA
LGPKETSFTFQMGVSDTRAIRSWTRDTGSEVEAHSVSHHGGWRVAHSRDEQSASTSSQAS
AGDAHQARGEKGTEQAGFDKTVQLQRMVDQRSVASDEKKVALLYLDNEEEEEGEGWF
NT seq 4674 nt   +upstreamnt  +downstreamnt
atgctgtcctggcggctgcagaccagctccgaaaaggccgagctccaggagctcaatgcc
cggctttatgagtacgtgtgccgggtgcgagagctggagcgcgagaacctgctgctggag
gaggagctgcgcagccggctgagccgggaggaccgctgggccgaagatcaagcgctctac
gccgaggaggcgcgcagcttgcgacagcagctcgacgaactgagctggtccacggcgctg
gccgagggcgagcgcgacgcgctgcggagggaactgctggacctgcagcgggaaggtttg
gaagccagcactgcccgcggccgcctggatgccgagctagaagcgcagcggcgggagctg
gaggaggcgctgggcgcgcgcgccgccctcgaggcgctgctgggccggctggaggcagag
cgacgagacctggatgcggcccacgagcgccaagtgcgagagctacgcgcccgtgccagc
agcctcaccatgcacttccgagcccgcgccaccggccccgccgcgcccccgccgcgcctg
cgggacgtgcacgacagctacgccctgctagtggccgagtcgtggagggagagcatgcag
ctgtacgaggacgaggtgcgcgagctggagcaggcgctgcgccgcggtcaagagagccgg
ctccaggcggaggacgaggcgcggctgtgcgcgcaggaggcggacgcgctgcggaaccag
gcgctggagttggagcagctgcgtgcgaggctggaggatgagctgcttcggatgcgcgag
gagtacgggatgcaggcggaggagcggcagagagtgatcgacagcctggaggatgagaag
gatgcccttaccttggccatggctgacaggctgcgggagtaccaggagctcctacaggtg
aagacgggcctcagcttggaggtagctacctacagggccttgttggaaggagaaagcaat
ccggagatattgatctggaccgagaacattgaaaacgtgccacgagagtccagaaacaca
tcctatcgctataccgactcagtattacagaggaagaatgagaagaatctctttccaagg
cgaaaaacaccttgggcagctgtaaatcacagctcgactttgtattccaacgggccaggg
caccttgactcacagacaaccacagctgttggaaatgctgcccgaaggggcttcctgacc
tcctgctattcttcctcagctacaacctcacagcagaagcccctggagaaaactgtcagc
agtcaagccagtttaagaccagtcataccaacccatggctttctaagaaacactgatgct
caagtgaaaacattctcccatggacccaaagctgaaggcatgggggacaccctcacacgg
cgggccacagagtccgttattaccagagagtcatacagaggtcaccagggcaacgtggcg
gcaggtgctgtgaacagcactcagtcaaatgagaggactgtcattctgggaaagaaatta
gaaacgcaggccactaaggagcaagagagggacaggtcaggggtggtcaaattaaagcca
gaggagaaaatgtttgattctaaagagaaggcttcggaggaaagaaacttgaggtgggaa
gagctgaccaagttagatgcaagagagagggaaagccagcatttaaggaacgaggccaaa
gggaaggaaacactgacggggagaagtagaaaagaaagagaagtgcccatcagtctagaa
gtatctcggggcagcaaatcagaggtgtccacaatacacttgcagtcatccggaaggaag
gattctgccaacagtagggaaagagaggtaaagaccaaagagacaaagttccacttggac
ggcaaggacactgctggctctctgcagagtgactctacgacagagaccatagcagaaaac
atcgtcaccaccatccttaagcagtttacccagtctccaggtgctgaagagaatgtcagt
tctttgccagacacaaaggtcacctacctggaccggaaagagtttcctggtgacaggaaa
accaagacggaaatcgtcatggagtcgaagctgacagaagacgtcgatgtttctgatgaa
gctggcctggactaccttctaagcaaggatgtcaaggaagtaggactgaaagggaagtca
acagagacagtgattggagagatgatcaacctcggtctaaaaggaagggaggggagagcc
aaagtcgtaaatgtggagattgtggaagagcccatgagctacgtaggtggtgggaaagta
gagttttctacccccttccaggtggaagaagtcgatgatgtgtctcccagccccaagggg
ttcattgaggaagaggagggcgaaggagaaacccacatggcattctcaatgcatcaacgt
cagaggaccaaccagccccaggtgaacgtccctcatgtggaagaagtgacggaggcgggc
gactcggagggggagcagagttatttcgtgtctaccccagatgagtaccctgggggacat
gacagagaagatgatggctctgtgtatgggcagatccacattgaggaagagtccaccatc
cggtactcatggcaagacgagattgcacaggggacttggagaaggaaagcgagaggtgac
acgggggaagagaagcacatgaaggtcctggaggttccatcggcttccctgggtggtgcc
tttggatctgctcacgtgaaggaagaagctagtggtgaactccacgctgaacccacaatc
attgagaaagagatcaaaataccgcatgaattccacacctccataaagggcgtcttctcc
agtgagcctcggcatcagttggtggaggtcattgggcagctggaggaaacgttgcctgag
cgcatgaaggaagagctgtctgccctgaccagacagagtcaaggagagccagggagtgtc
tcagtggatgtaaagaaagtccagagctctgctggcggttctgtgaccttaatggctgag
gtcaacctctcgcagactgtagatgctgatcagttagacctggaggagttgagcagggac
gaagctggggaaatagagaaggctgtggagtcagtggtaagagagagcttgaccaagcgc
tccagcccagtgcctagaagcccagacagggaagatggagaggaggcgcctgccggtggc
tttctcttcaagcgctgggccaccagggagctgtatagcccgtctggtgagaaggatgat
actgaccgggtctttcacagctcggatcagcgtgttacccagggcccagtgtcagccacc
gtggaagtgaccagcccaacgggttttgtgcagtctcatgtgctggaggatgtaagccag
tctgtaaggcacgttaaactaggccccactgagatgtggaggacggaacaggtgtcctac
ggaggacccacctcaccggtggtggaggtaagtgaagacttcagcgaggcagtcagctcc
gagggagccagccgctccgtgaggcacgttacactgggtccccgtcaaaaccgagtgtcc
acagaagtcattttccgaggctctgtgcctaccgggcaggagacaggagacacaggagag
cctgaccctgcagcactgtctgtggaagctgacatctcagggagtggcaggatgcccggc
tctcagcaggctcacaatgaaaaggaaactccttttccgggtcctatttctggggcagcc
caggttggtagtaacttttcaactgaagggtcagtgggtacccagacttttgttaggcat
ctccagttaggctccagagaagggttcagagaagaaatccagttcatagctcccatccca
gacagggcagagtggggagaagaggattctgggtacaccagagtgtctctagggaggagc
acctccatccagcacattgacatcgtgcctcagaggtaccaggcttccaagcaggtggcc
ccacagacattgggatttagggactcagaaggcgtagtcctggtggagaggtcagcaggt
atgacccaggccactcacaatttcacctcagatagagaaatcctcaagaaggaagagaac
acattccagagggtcatttctgggtcccctccagacagtgtgggcgacacaggagcagag
gtgacagaaaacatcagcagatccttcaggcacattcaaataggtcctacagaggaggac
ccctctgaatacattgtcaccagtggacccttgtctaaaacatttgttcttgacagttcc
gtggcatcccctgggccgggtgggggagcagacggcagtagcacaccatgtcacattgca
ctggggcccaaagaaacttcatttacctttcagatgggtgtaagtgacacgagagccatc
cgcagctggacccgagacacagggtcagaagtggaagctcacagtgtgtctcaccacggt
ggctggagagttgctcacagtagggatgagcaatcagccagcaccagctctcaggcctct
gctggggatgcacaccaggcccgtggagagaaaggcacggagcaggctggatttgacaag
acggtgcagctgcaaagaatggtagaccaaaggtctgtggcttcagatgagaagaaagtg
gcccttctctatctagacaatgaggaggaagaggagggcgagggatggttttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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