KEGG   Rattus norvegicus (rat): 308755
Entry
308755            CDS       T01003                                 
Symbol
Blm
Name
(RefSeq) BLM RecQ like helicase
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03440  Homologous recombination
rno03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    308755 (Blm)
   03460 Fanconi anemia pathway
    308755 (Blm)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rno03032]
    308755 (Blm)
   03400 DNA repair and recombination proteins [BR:rno03400]
    308755 (Blm)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     308755 (Blm)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    308755 (Blm)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     308755 (Blm)
    Bloom's syndrome complex (BTR)
     308755 (Blm)
   FA (Fanconi anemia) pathway
     308755 (Blm)
SSDB
Motif
Pfam: BLM_N BDHCT_assoc DEAD BDHCT Helicase_C RecQ_Zn_bind RQC HRDC ResIII
Other DBs
NCBI-GeneID: 308755
NCBI-ProteinID: NP_001413904
RGD: 1308810
Ensembl: ENSRNOG00000011213
Position
1:complement(143819072..143905300)
AA seq 1401 aa
MAAVPLNNLQEQLQRHSARKLKNQFSISKPKPSGFTFKKKTPEGDVSVVRTPVLSDKDVN
MSEALSYTEPPLHKPKQQSNIDGFFKNSPGGQQSKETCSELSLPEVVQIPQDASCTTPKT
PAVKKPHVAIFKKLEFSSSADSLSDWADIDDFDVPASDAFVSLTRNPTTRVSTAKKLSSS
KRNFFKPPPRASAVKADLTPSSPECLQVDLTKEQEEEADCLSRDVICIDTDPASEELLEK
DVQEGLSLDARLGTERVDSAKKSHEDKAAFQSPQNALYFEHNDNDYDIDFVPPSPEEIIS
TASSSLKCSSMLKDLDDSDKEKDILSTSKDLSKPEEMTTPKSDLGTNEDCDAQQTSLQQQ
LIRVMEHICKLVDTVPIDELKALTCGDKLLQQRDIRRKLLAEAGFNRNDVNLLGSLWRHR
PDSLDNTVQCDSCPVGHPGKELNSPYLPSHSLSTEECLPTTASGKTGFSATPKSLSERPP
LNSHLQKSFVSSNWAETPRTESRTESTYFPGSVLTSTTVKDESKHVASGRDIEREVQASY
DIDNFNIDDFDDDDDDDWENIMHNFSVSKSSTAAYPPIKEGGPVKSLSERISSAKAKFLP
VASTAQNKNLSESIQNCSDKFAQNLSSKNPKHEHFQSLNFPHTKEMMKIFRKKFGLHNFR
TNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTS
FDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLL
ARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMALTATANPRVQKDILTQLKILR
PQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYDSGIIYCLSRKECDTMADTLQ
REGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKS
VEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGNYHTRETHVNNLYSMVHY
CENITECRRIQLLAYFGEKGFNPDFCKKHPDVSCDNCCKTKDYKTKDVTDDVKNIVRFVQ
EHSSSPGTRNIGPAGRFTLNMLVDIFLGSKSAKVQSGIFGKGSAYSRHNAERLFKKLILD
KILDEDLYINANDQPIAYVMLGTKAHSVLSGHLKVDFMETENSSSVKKQKAAVAHVSQRD
EAVMKCLGELADVCKLLGKVFGVHYFNIFNTATLKKLAESLSSDPEVLLQIDGVTEDKLE
KYGAEIIPVLQKYAEWTLPAEGGSPGSRGSRRSTPEETEEEEAVSSHYFANQTRNERKRK
KVSASQKPKRRRTSYGGGFRAKGGSTTCRKPSSKSKFSGVTGSRSASCASQATSAASRKL
GIMAPPKPVNRPFLRPAYAFS
NT seq 4206 nt   +upstreamnt  +downstreamnt
atggctgctgttcctctgaacaatctacaagaacaactacagcgtcactcggccagaaaa
cttaaaaatcagttcagcatttccaaaccaaaaccttcaggttttacttttaaaaagaaa
acaccagagggtgatgtgtctgtggtaagaacacctgtgttaagcgataaagatgtgaat
atgtctgaggccttgtcatatactgagcctccactccacaaaccaaagcagcagtcaaac
atcgatggcttctttaaaaattcccctggagggcagcaaagcaaggagacctgctccgaa
ctgtccctgccggaggtggtacagattcctcaggacgcttcttgtactaccccaaaaacc
ccagctgtgaagaaaccccacgtggccattttcaaaaaactggaatttagttcttcggca
gactctctcagtgattgggctgatatagatgactttgatgtgccagcatcagacgcattt
gtttccctgaccagaaaccctactacaagagtgagcactgctaagaaactgagtagcagt
aagagaaacttctttaaaccaccacctagagcaagtgcagtaaaggccgacttgactcct
tcctcccccgaatgcctgcaagtggatttaacgaaggaacaggaggaagaggcggactgc
ctgagcagggatgtgatctgcattgacactgaccctgcttctgaggagctcttggagaag
gatgtgcaggaaggcctgtcattggacgctcgcttggggactgaaagagttgacagtgca
aagaagagccatgaagacaaggctgcattccagtcacctcagaacgctctgtactttgaa
cacaatgacaatgattatgatatagattttgttccaccttctccagaagaaatcatttcc
actgcttcttcctcgttgaaatgttccagtatgctaaaggatctcgatgactctgacaaa
gagaaggacattctgagtacctcaaaagatctgtcaaaaccagaggaaatgaccacaccg
aagtctgatctgggaaccaatgaagactgtgatgcccagcagactagcttgcagcagcag
cttatccgtgtgatggagcacatctgtaaattagttgatactgttcctattgatgaactg
aaagctctgacttgtggggacaaactgcttcagcagcgagacataagaaggaagctcctt
gctgaagcaggttttaatagaaacgatgtcaatcttctgggttctttgtggaggcacagg
ccagattcgcttgataacactgtgcagtgtgactcctgtcctgtggggcatcctggtaaa
gagttaaactctccataccttccctcacactccctctccactgaggaatgcttacccacc
actgcttcaggaaagacaggattctcagccaccccgaagagtctctctgaaaggccacca
ttgaattcccacttacagaagtcctttgtaagtagcaactgggctgaaacaccaaggaca
gaaagcaggacggaaagcacttacttcccagggagtgttctcacaagcaccactgtgaag
gatgagagtaaacatgttgcttcaggacgtgacatagagagagaagtccaggcttcctac
gatattgataattttaacattgatgactttgatgatgatgatgatgatgactgggaaaac
ataatgcacaatttttcagtcagcaaatcttccacagctgcctacccacctatcaaggaa
ggtggcccagttaaatctctatcagaaaggatttcttcagccaaggcaaagtttcttcca
gtggcatcaaccgctcaaaataaaaacctctcagagtcaattcagaattgctctgataag
tttgcacaaaatctatcatcaaaaaatccaaaacatgaacattttcaaagtcttaatttt
cctcatacaaaagaaatgatgaagattttccgtaagaaatttggcttgcataattttaga
actaatcagctagaggcgatcaatgctgcgctgcttggtgaagactgctttatcctgatg
cccactggaggtggtaaaagtttgtgctaccagctccctgcctgtgtttctcctggagtc
actattgtcatttctcccttgagatcactaatagtggaccaagtccaaaagctgacttcc
tttgatattccagctacgtacctgacaggggataagactgactccgaagctgcaaacatt
tacctccagttgtcaaagaaagacccgatcatcaagcttctgtatgtcaccccagagaag
gtctgtgcaagtaacaggctgatttccactctggagaatctgtatgagcgaaagctcttg
gcacgatttgtcattgatgaagcacactgtgtgagtcagtggggccatgatttccgtcaa
gattacaaaaggatgaatatgcttcgccagaggttcccttctgtcccagtgatggctctc
acggccacagcgaaccccagggtacagaaggacatcctcacgcagctgaagattctcagg
cctcaggtgtttagcatgagctttaacagacacaatctgaaatactatgtattaccaaag
aagcccaagaaagtggcacttgattgcctagagtggatcagaaagcatcacccttatgac
tcggggataatttattgcctctccaggaaggaatgtgacacaatggccgacaccttacag
agagaaggtcttgctgctctggcttaccatgcaggtcttagtgattctgccagagatgag
gtgcagcacaagtggatcaaccaggacaactgccaggttatctgtgcaaccattgcattt
ggaatgggaatcgacaaacctgacgtgcgatttgtggttcatgcatctcttcctaaatct
gtggagggttattaccaagaatccggccgagctgggagagacggggaaatatctcactgc
gtgcttttctatacctatcatgacgtgaccagactgaagagacttataatgatggaaaaa
gatggaaactatcatacaagggaaactcacgtcaataatttatatagcatggtacattac
tgcgaaaacataacagaatgcagaagaatacagcttttagcttactttggtgaaaaagga
tttaaccctgatttttgtaagaaacatccagatgtttcttgtgacaattgctgtaaaaca
aaggattataaaacaaaagatgtgactgatgatgtgaaaaatattgtaagatttgttcaa
gaacacagttcatcaccaggaacaagaaatataggacctgctggaagatttactctgaac
atgctagtcgacattttcttgggaagtaagagtgcaaaagttcagtctggaatatttgga
aaggggtctgcatattcacgccacaatgctgaaagactttttaaaaagctgattctagac
aaaatcttggatgaagacttatatatcaatgccaatgaccaaccaattgcctatgtgatg
ctcggaacaaaagcccacagtgtgctgagcggccacttgaaggtggacttcatggaaacg
gaaaattcgagcagtgttaaaaaacaaaaagccgcagtggcccacgtgtcccagagagac
gaggcagttatgaagtgtctgggagaacttgcagacgtctgcaaattgctgggcaaagtc
tttggtgtccattacttcaatattttcaatacagccaccctcaaaaagcttgcagaatct
ttatcttctgatcctgaggttttgcttcagattgatggtgttactgaagacaagctggag
aaatatggtgcagaaataattccagtattacagaagtacgcagagtggacattgccagct
gaaggtgggtccccaggcagcagaggctctaggaggagcaccccagaggagacggaggag
gaggaagctgtatcttctcactactttgcaaatcaaactagaaatgaaagaaagaggaag
aaagtgtcagcctcccaaaagcccaagagaagaagaactagttacggcggcggcttcaga
gcaaaggggggctctactacatgcagaaaaccatcttctaaaagtaaattctctggtgta
actggatcccgctcagcctcgtgtgcttctcaggcaacatcagcagccagtagaaaactg
gggattatggctcctccaaagcctgtaaatagaccgttcctcaggcctgcgtatgccttc
tcctaa

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