KEGG   Rattus norvegicus (rat): 308865
Entry
308865            CDS       T01003                                 
Symbol
Atg16l2
Name
(RefSeq) protein Atg16l2
  KO
K20868  autophagy-related protein 16-2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    308865 (Atg16l2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    308865 (Atg16l2)
   03029 Mitochondrial biogenesis [BR:rno03029]
    308865 (Atg16l2)
Membrane trafficking [BR:rno04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    308865 (Atg16l2)
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    308865 (Atg16l2)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    308865 (Atg16l2)
SSDB
Motif
Pfam: ATG16 WD40 ANAPC4_WD40 TerY_C IFT57
Other DBs
NCBI-GeneID: 308865
NCBI-ProteinID: NP_001178489
RGD: 1311400
Ensembl: ENSRNOG00000019413
Position
1:complement(165100946..165123307)
AA seq 623 aa
MAGPSAPCDPCAPVAAWKRHILRQLRHRDRTQKALFLELVPAYNHLLEKAELLAKFSEKL
KSEPKDVISTPHQDSREEASGTGPDQVSSPASLKVKWQQEKKGLQLVCGEMAYQVVRKSA
ALNTLQSQLEERQGRLEALQACVVQLQEARAQQSRQLEERQAENSAQREAYETLREQAAH
QEAALRRLQEEARDLLEQLVQRKARAAAERNLRNERRERANQARVSQELKKAAKRTVSIS
EIPNTLEDGTKEETVALGPAAKPEFLESDSCEKWKRPYRSASATSLTLSRCVDVVKGLLD
FKKRRGHSVGGVSEQRYQSIPVCVSAQIPSQAQDVLDAHLSEVNAVCFAPNSSLLATGGA
DRLIHLWNVVGGRLEANQTLEGAGGSITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKE
TLSGHKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGDHII
ISGHNDQKIRFWDSRGPHCIQVIPVQGRVTSLNLSHDQLHLLSCSRDNTLKVIDLRISNI
RQVFRADGFKCSSDWTKAVFSPDRSYALVGSSNGTLYIWDVNTGKLETSLQGPHCTAVNA
VAWCFSGNHVVSVDQVRKVVLWH
NT seq 1872 nt   +upstreamnt  +downstreamnt
atggcgggacccagcgccccctgcgatccctgcgcgcccgttgccgcctggaagcgccac
atcctgcgacagctgcggcatcgggaccgcacgcaaaaggcgctcttcttggagctagtg
ccggcttataaccatctcttagagaaggctgaactgctagccaagttctcagaaaagctg
aagtcagaaccaaaggatgtcatctccaccccacatcaggactcgagggaggaggcctca
gggacaggccctgaccaagtctcatcaccagcctccctgaaggtgaagtggcagcaggag
aagaagggtctgcagctggtctgtggtgagatggcctaccaggtggtgaggaagagcgca
gccctaaacaccctgcagtcacagctagaggagcgtcagggcaggctggaagccctgcag
gcctgtgtggtgcagctacaggaggcgcgggctcagcagtcccggcagctggaggaacgg
caagcggagaactcggcacagagagaagcctacgagactctgcgcgagcaagctgcgcac
caggaagcggcactgcgcaggctccaggaagaggcacgcgacttgctggagcaacttgtg
cagcgtaaggcgcgcgccgccgccgagcgcaatctacgtaacgagcgtagagagagggcc
aatcaggctcgggtgtcccaggagctgaagaaagcggccaagcggactgtgagcatcagc
gagatcccaaacactctagaagatgggaccaaagaggagactgtggctctaggtcctgcc
gctaagcccgagttcctggagagtgacagttgtgaaaaatggaagaggccttataggtct
gcctcagccacctctctgacactgtcccgctgtgtggatgtggtgaaggggctgctggac
ttcaagaaaagaagaggtcactcggttgggggtgtctctgagcagcggtaccagagcatc
cctgtgtgtgtgtctgcccaaattccttcccaggctcaagatgtcttggatgcccatctc
tctgaggtcaatgctgtttgttttgcccccaatagcagcctcctggcaactggaggggca
gaccggcttatccatctctggaatgttgtaggcggtcgcctggaggccaaccaaaccctg
gaaggagctggtggcagcatcaccagtgtggattttgacccctcgggctcccaggttttg
gcggctacttacaaccaggctgcccagctctggaaggtgggagagacacaatccaaggaa
acattgtctggacacaaggacaaagtgacagctgccaaattcaagctaacaaggcaccag
gcagtgactgggagccgagaccggacagtgaaggagtgggacctgggccgcgcctactgt
tccaggaccatcaatgtactttcctactgcaatgacgtggtatgcggggaccacatcatc
atcagtggccacaatgaccagaagatccggttttgggacagcaggggcccacactgcatc
caggtcatccctgtacagggccgggttacctccctgaaccttagccatgaccagctgcat
ctgcttagctgttcccgagacaatacgctgaaggttatcgacctacgaatcagcaatatc
cgacaggtgttcagggcggatggcttcaagtgcagttctgattggaccaaagctgtgttt
agccccgacagaagctatgcactggtgggctcctcaaatggcaccctgtacatctgggat
gtgaacactgggaaactggagaccagcctacagggaccgcactgcactgctgtcaatgcc
gtggcttggtgcttctccgggaaccatgttgtgagtgtggaccaagtcaggaaggtggtg
ctctggcactag

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