KEGG   Rattus norvegicus (rat): 308896
Entry
308896            CDS       T01003                                 
Symbol
Usp47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47
  KO
K11857  ubiquitin carboxyl-terminal hydrolase 47 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    308896 (Usp47)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    308896 (Usp47)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     308896 (Usp47)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   308896 (Usp47)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    308896 (Usp47)
SSDB
Motif
Pfam: USP47_C UCH UCH_1 ubiquitin Dockerin_1
Other DBs
NCBI-GeneID: 308896
NCBI-ProteinID: NP_001101012
RGD: 1310411
Ensembl: ENSRNOG00000026754
UniProt: B2GVC1 F1MAA1
Position
1:175586758..175669904
AA seq 1355 aa
MVPGEENQLVPKEIENAAEEPRVLCIIQDTTNSKTVNERITVNLPASTPVRKLFEDVANK
VGYINGTFDLTWGNGINTADLAPLDHTSDKSLLDANFEPGKKNFLHLTDKDGEQPQMLLD
DSSHVDDSVHDRFIGPLPREGSVASTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLN
SLLQTLFMTPEFRNALYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSF
GWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWR
IDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFL
HFPYLLTLQLKRFDFDYTTMHRIKLNDRMSFPEELDMSTFIDIEDEKSPQTESCTDSGAE
NEGSCHSDQMSNDFSTDDAVDEGICLESSTGSEKISKPGLEKNSLMYELFSVMVHSGSAA
GGHYYACIKSFSDDQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLI
YRLKDPTRNAKFLEVDEYPEHIKNLVQKERELEEQEKRQREIERNTCKIKLFCLHPVKQV
MMENKLEVHKDKTLKEAVEMAYKMMDLEDVIPLDCCRLVKYDEFHDYLERSYEGEEDTPM
GLLLGGVKSTYMFDLLLETRKPDQIFQSYKPGEVMVKVHVVDLKAETVAAPVTVRAYLNQ
TVLEFKQLISKATHLPAEPMRIVLERCYNDLRLLSMPSKTLKAEGFFRSNKVFVESSETV
DHQAAFTDSHLWKLLDRHANTIRLFVLLPEQSPGSYSKRTAYQKAGGDSGNVDDDCERAK
GPAGSLKSVDAILEESTEKLKSLSLQQQQDGDNGDSSKSTETSDFENIESPLNERGSSTS
VDNRELEQHIQTSDPENFQSEERSDSDVNNDRSTSSVDSDILSSSHSSDTLCNADSAQIP
LANGLDSHSITSSRRTKANEGKKETWDTAEEDSGTDSEYDESGKSRGEMQYMYFKADPYT
ADEGSGEGHKWLMVHVDKRITLAAFKQHLEPFVGVLSSHFKVFRVYTSNQEFETVRLNET
LSSFSDDNKITIRLGRALKKGEYRVKVCQLLVNEQEPCKFLLDAVFAKGMTVRQSKEELI
PQLREQCGLDLSIDRFRLRKKTWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGVEKMK
SMSQLAILTRRWRPSEMKLDPFQELVLESNSVDELREKLSEISGIPLEDIEFAKGRGTFP
CDISVLDIHQDLDWNPKVSTLNVWPLYICDDGAVIFYRDRTEEVMELTDEQRNELMKKES
SRLQKTGHRVTYSPRKEKALKIYLDGAPNKDVAQD
NT seq 4068 nt   +upstreamnt  +downstreamnt
atggtgcccggcgaggagaaccaactggtcccgaaggagatagaaaatgctgctgaagaa
cctagagtcttatgtataatacaggacactactaactcaaagacagtgaatgaacggatc
acagtgaatttaccagcatctaccccagtcagaaagctctttgaagatgtggccaacaaa
gtaggctacataaacggaacctttgatttgacatggggaaatggaatcaatactgctgat
ttggcaccactggatcacaccagtgacaagtctcttcttgatgctaattttgagccagga
aagaagaactttctgcatttgacagataaagatggagaacagcctcagatgctattggat
gactccagtcacgtggacgacagcgtgcatgacaggtttataggtccacttccaagagaa
gggtctgtggcttctaccagtgattatgtcagccagagctactcctattcatcaattttg
aacaagtcagaaactggttatgtgggattagtaaaccaggcgatgacgtgctatttgaat
agccttttgcaaacactttttatgactcctgaatttaggaatgccttatataagtgggag
tttgaagagtctgaagaagatcctgtaacgagcatcccataccagcttcagaggcttttt
gttctgttacaaaccagcaaaaagagagcaattgagaccacagatgtcacaaggagcttt
ggatgggatagcagtgaggcttggcaacagcatgatgtacaagaactgtgccgtgttatg
tttgatgctttggaacagaaatggaagcaaacagaacaggctgatcttataaatgagctg
taccaaggcaaactgaaagactatgtgaggtgtctggaatgcggttatgaaggctggaga
attgacacgtaccttgatattccactggtcatccgaccttatgggtctagccaagcattt
gccagtgtggaagaagcattgcatgcatttattcaaccagagatcttggatggcccaaat
caatacttctgtgaacgttgtaagaagaagtgcgatgctcgtaagggccttcggtttttg
cactttccctatctgctgactttacagttgaaaaggtttgattttgattatacaaccatg
catagaattaaactgaatgatcgaatgtcatttccagaggagctggatatgagcacattt
attgatattgaagatgagaaatctcctcagactgaaagttgcactgatagtggagcggaa
aatgaaggcagttgccacagcgaccagatgagcaatgatttctccacggatgatgctgtt
gatgaagggatatgcctggagagcagtactgggagtgagaagatttcaaaacctggcctg
gaaaagaactccctgatgtatgagctcttctcggtgatggtacattcagggagtgctgct
gggggacactattatgcttgcataaagtctttcagcgacgatcagtggtacagtttcaat
gaccaacatgtgagcaggataacacaagaagacattaagaagacacacggtgggtcttca
ggaagcagaggctactactccagtgcttttgcaagctcaacaaatgcatatatgctgata
tacagactgaaggatccaacaagaaatgcaaaatttctggaagtggatgagtacccagaa
cacattaagaacctggtgcagaaggagagagaattggaagaacaggaaaagaggcaacga
gaaattgaacgaaacacatgcaagataaaattattctgtttacatcctgtgaaacaagta
atgatggaaaacaagttggaggttcataaggacaagacattaaaggaagcagtagaaatg
gcttataagatgatggatttagaagacgtgattcccttggattgctgtcgcctggtaaaa
tatgatgagtttcatgattacctggaacgatcctatgagggagaagaagatacgccaatg
gggctgcttctaggaggagtcaagtcaacgtacatgtttgatctgctgttggagacaaga
aagcctgatcaaatttttcagtcttataaacctggagaagtgatggtgaaagttcatgtt
gtcgatctgaaggcagagactgtcgctgctcctgtaacagtgcgtgcttatttaaatcag
acagttttggagttcaaacagctgatctcaaaggccacacacttacctgcagaacccatg
aggatcgtgctggagcgctgctacaacgacctgcgcctgctcagcatgcccagcaagacc
ctgaaggctgagggcttctttagaagtaacaaggtgtttgttgaaagctctgagacagta
gatcaccaggcagccttcacagactcccacttgtggaaactcctggatcgacatgcaaat
acaatccggttatttgttttgctgcctgaacaatctccagggtcttattcgaaaaggaca
gcataccagaaagctggaggggattctggtaatgtggacgatgactgtgaaagagccaag
ggacctgcaggaagtttaaagtctgtggatgccattctagaagagagcactgaaaaactc
aaaagcctgtcactgcagcagcagcaggatggggacaacggagacagcagcaaaagcact
gagacaagtgactttgagaatattgaatcccctctcaatgagaggggctcttccacctct
gtggataatcgagaacttgaacaacacattcagacttctgacccagaaaactttcagtct
gaagaacgctcagactcagatgtgaataatgaccggagtacaagttcggtagacagcgat
attcttagctctagtcacagcagcgacactttgtgcaatgcagacagcgctcagattcct
ttggccaatggactcgattctcacagtatcacaagtagtagaagaactaaggcaaacgaa
gggaaaaaggagacatgggacacagctgaagaagactctgggactgacagtgaatatgat
gagagtggcaagagcaggggggagatgcagtacatgtacttcaaagctgacccctacact
gcggacgaaggctctggggaaggacacaaatggttgatggtgcatgttgataagagaatc
accctggcagctttcaaacagcatttagagccttttgttggagtcctctcctctcacttc
aaggtttttcgagtgtacaccagcaatcaagagtttgagaccgtccggttgaatgagacc
ctttcatcattttcagatgacaataagatcacaatccgactggggagagcactgaagaag
ggagagtacagagttaaagtgtgccagctcttagtcaatgagcaagagccatgcaagttt
ctgctagacgccgtatttgctaaaggcatgactgtgcggcaatcgaaagaggagctgatt
cctcaactcagggagcagtgtggcttagacctcagcatcgacaggtttcgtctaaggaag
aaaacatggaagaatcctggcactgtttttttggattatcatatttatgaagaagatatt
aatatttctagcaactgggaagttttcctggaagttcttgatggtgtggagaagatgaag
tccatgtcacagcttgccattttaaccagacggtggaggccttcggagatgaagttggat
cccttccaggagcttgtgttggagagcaatagtgttgatgagcttcgagagaagctgagt
gaaatcagtgggattcctttggaagacattgaatttgccaagggtaggggaaccttcccc
tgtgatatttctgtccttgatattcatcaagatttggactggaaccctaaagtctctacc
ttgaatgtgtggcctctttatatctgtgatgatggtgccgtcatattttatagggataga
acagaagaagtaatggaattgacagatgagcaaaggaatgaactgatgaaaaaggaaagc
agccgactgcagaagacgggacatcgtgtgacatactcccctcgcaaagagaaagcactc
aagatctacctggatggggcgccaaataaagacgtagctcaagactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (2)   
   RefSeq(pep) (6)   
DNA sequence (20)   
   RefSeq(nuc) (6)   
   GenBank (7)   
   EMBL (7)   
Protein domain (5)   
   Pfam (5)   
All databases (45)   

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