KEGG   Rattus norvegicus (rat): 308901
Entry
308901            CDS       T01003                                 
Symbol
Trim21
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM21
  KO
K10651  tripartite motif-containing protein 21 [EC:2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno05322  Systemic lupus erythematosus
Brite
KEGG Orthology (KO) [BR:rno00001]
 09160 Human Diseases
  09163 Immune disease
   05322 Systemic lupus erythematosus
    308901 (Trim21)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    308901 (Trim21)
   04131 Membrane trafficking [BR:rno04131]
    308901 (Trim21)
   04121 Ubiquitin system [BR:rno04121]
    308901 (Trim21)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     308901 (Trim21)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     308901 (Trim21)
Membrane trafficking [BR:rno04131]
 Autophagy
  Other autophagy associated proteins
   TRIM-directed selective autophagy
    308901 (Trim21)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    308901 (Trim21)
SSDB
Motif
Pfam: SPRY PRY zf-B_box zf-RING_UBOX zf-C3HC4 zf-C3HC4_3 zf-RING_2 zf-C3HC4_2 zf-C3HC4_4 zf-RING_6 zf-RING_5 zf-Nse U-box Prok-RING_4 zf-RING_4 zf-RING_10
Other DBs
NCBI-GeneID: 308901
NCBI-ProteinID: NP_001076041
RGD: 1305795
Ensembl: ENSRNOG00000018517
Vega: OTTRNOG00000002269
UniProt: A6I748
Position
1:complement(166376829..166399441)
AA seq 471 aa
MSHSTTSKMSLEKMWEEVTCSICLEPMVEPMSIECGHCFCKECISEVGGNGGGSCPVCRQ
HFLLRNLRPNRHIANMVENLKQEAQNTKKGTQEVHCMKHGEILHLFCEEDGQALCWVCAQ
SGKHRDHTKVPIEEAAKIYQEKIHKALEKLRKGKELAEKLEMDLAMQRTDWKRNIDTQKS
RIHEEFAHQNSLLAQEEQRQLQRLEKDEREHLRLLGEKEAELAEKNQALQELISELERRS
RGSELELLKEVRIVLERSVSWKLDTVDVDSPDLTSTCHVPGRKKMLRTCWVHITLDRDTA
NSCLIISKDRRQVRMGDTYQNVSENAERFNNYPMVLGAQRFSSGKMYWEVDVTQKQAWDL
GVCRDSVQRKGHFSLSPENGFWTIWLWQKDNYEAGTSPQTTLHIQVPPCQIGIFVDYEAG
IVSFYNITDHGSLIYTFSECAFIGPLRPFFSVGFNDDGGNSAPLKLCPLKI
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgtcacactctacaacctcaaaaatgtccctggaaaagatgtgggaggaggtcacctgt
tctatctgcctggagcccatggtggagcctatgagtatcgaatgtggccactgcttttgc
aaggaatgcatttctgaggttgggggaaatgggggcggttcatgtcccgtgtgccggcaa
cactttctgctcagaaacctcaggcccaatcggcatatagcaaacatggtggaaaacctt
aaacaagaggcccagaataccaaaaagggcacccaggaagtgcactgcatgaagcatgga
gagatacttcacctgttctgtgaggaagatgggcaggccctttgctgggtgtgtgcccag
tctgggaaacaccgggaccacaccaaggtccccattgaagaggctgctaagatataccag
gagaagattcacaaggctttagaaaaactgagaaaagggaaagagttggccgagaagttg
gaaatggatcttgcaatgcaaagaacagactggaagaggaacattgacacccagaagtcg
aggattcacgaagagttcgcacatcagaatagcttgctggctcaggaggaacagaggcag
ctgcagaggctggagaaggatgaaagggagcacctgagactccttggggagaaggaggct
gagctggctgagaagaaccaggccctgcaggaactgatctcagagctggagaggaggagc
cgaggttcagaactggagctattgaaggaggtgaggatcgtcctggaaaggagtgtatcc
tggaaactggacacggtagatgttgattccccagacctgacaagcacatgccatgtgcca
gggcggaagaagatgctgaggacctgttgggttcatattactctggatcgtgacactgcc
aactcgtgcctcatcatctcaaaggatcggagacaagtgaggatgggagacacctatcag
aatgtgtctgaaaatgctgagagatttaataattaccccatggtgctaggtgcccagaga
ttctcctctgggaagatgtactgggaggtagatgtgacccaaaagcaggcctgggatttg
ggggtttgcagagattctgtacagaggaaagggcatttttcactcagtcctgaaaatggc
ttctggaccatttggctttggcaaaaagacaactatgaggctggtaccagtcctcagacc
accctccatattcaggtacctccgtgccaaattgggatctttgtagactatgaagctggc
attgtctccttctacaacataactgaccacggctccctcatctacaccttctcagagtgt
gcttttatcggacctctgcgacccttctttagtgtcggtttcaatgatgatggggggaat
tcagcccctctaaagctctgtccactaaagatatga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (16)   
   Pfam (16)   
All databases (42)   

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