KEGG   Rattus norvegicus (rat): 309126
Entry
309126            CDS       T01003                                 
Symbol
Tnpo1
Name
(RefSeq) transportin-1 isoform b
  KO
K18752  transportin-1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    309126 (Tnpo1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    309126 (Tnpo1)
   03009 Ribosome biogenesis [BR:rno03009]
    309126 (Tnpo1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     309126 (Tnpo1)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    309126 (Tnpo1)
  Pre-60S particles
    309126 (Tnpo1)
SSDB
Motif
Pfam: HEAT_EZ HEAT HEAT_2 Arm Vac14_Fab1_bd IBN_N Cnd1 PDS5 Adaptin_N MMS19_C CEP104-like_TOG UNC45-central Dopey_N SCD RTP1_C1 DUF3689
Other DBs
NCBI-GeneID: 309126
NCBI-ProteinID: NP_001094162
RGD: 1308372
Ensembl: ENSRNOG00000014999
UniProt: A0A8I6AG33
Position
2:complement(31941731..32034366)
AA seq 890 aa
MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK
GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEAEVRKNVCRALV
MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL
IPVLVNGMKYSDIDIILLKGDVEEDEAIPDSEQDIRPRFHRSRTVAQQHEEDGIEEDDDD
DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPEQYEAPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVA
SWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV
NT seq 2673 nt   +upstreamnt  +downstreamnt
atggagtatgagtggaaacctgacgagcaagggcttcagcagattctgcagctgctcaag
gagtcccagtccccagacaccaccatccagaggaccgtgcaacaaaaactggaacaactt
aatcaatatccagattttaacaactacttaatttttgttcttacaaaattaaaatctgaa
gatgagcccacacggtcattgagcggtctgatcttgaagaacaatgtgaaagctcatttt
cagaacttcccgaacggtgtgacggacttcatcaagagtgaatgtctaaataatattggg
gactcctctccgctgatcagggccactgttggtattttaattacgaccatagcctccaag
ggagaactgcagaattggcctgacctcttaccaaaactctgtagcctgctggattctgaa
gactacaacacctgtgagggggcattcggtgcccttcagaagatatgtgaggactccgcg
gagattttagacagcgatgtcttggatcgccctctcaacatcatgatccccaagttctta
cagtttttcaagcacagtagtcccaaaataaggtctcacgctgttgcatgtgtcaatcag
ttcatcatcagtcggacccaagcgctcatgttgcacatcgactccttcattgagaacctc
tttgcactggctggtgacgaggaagccgaggtgcggaagaacgtgtgccgagcgcttgtg
atgctgctggaagtccggatggaccgtctgctgccgcacatgcataacatagtcgagtac
atgcttcagaggacccaagaccaagatgagaatgtggctctggaggcctgtgaattctgg
ctgactttggctgaacagccaatatgcaaagatgtacttgtaaggcatctgcctaagttg
attcccgtgttagtgaatggcatgaagtactcagatatagacatcatcctgctgaagggg
gatgttgaagaagacgaggccatccctgatagtgagcaggatatacggccacggttccat
cgctcaaggacggtggctcagcagcatgaagaggatgggattgaagaggatgacgacgac
gacgatgagattgatgatgacgataccatttctgactggaatctcagaaagtgttctgct
gctgctctcgatgttctcgcaaacgtttatcgtgatgagcttttgccacacattttgcca
cttttgaaagaattgcttttccatcacgagtgggttgtgaaagagtctggcatcttggtt
ttaggagcaattgctgaaggttgcatgcaaggcatgattccgtacctgcccgagctcatt
cctcacctcattcagtgcctttctgacaaaaaggctcttgtgcgttccatcacctgctgg
actctaagccgctatgcacactgggtagtcagccagccaccagatacatacctgaagcca
ttaatgacggaattgctgaagcgtatcctggatagcaacaagagagtacaagaagctgct
tgcagtgcctttgctacgttagaagaggaggcttgtacagagcttgtcccctaccttgct
tatatactcgacaccctcgtcttcgccttcagtaaataccagcacaagaacctgctcatt
ctgtacgatgccatagggacactagcagattcagtgggacatcatttaaacaagccagaa
tatattcagatgctaatgcctcctctgatccagaagtggaacatgttaaaagatgaagac
aaggatcttttccctttacttgagtgcctctcatctgttgccacagccttgcagtctggt
ttccttccatattgtgaacctgtgtatcagcgttgtgtaaacctggtacagaagacacta
gcacaagccatgctaaacaatgctcagccagaacaatatgaagctccagataaagacttt
atgattgtggctcttgacttactcagtggcctggctgaaggactgggaggcaacattgag
cagctggtggcccgaagtaacatcctgacactgatgtatcaatgcatgcaggataaaatg
cccgaagttcggcagagttcttttgcattactaggtgatctgactaaagcttgctttcag
cacgttaagccttgtatagctgatttcatgccaatattgggaaccaatctaaatccagag
tttatttcagtctgcaacaacgccacctgggcaattggggaaatatcaattcaaatgggc
atagagatgcagccttacatccctatggtgctgcaccagctcgtggagatcattaacaga
cccaacaccccaaagacgctgttggagaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgtacctct
ctgagaaacataagagacaatgaagaaaaagattcagcattccgtgggatttgtaccatg
atcagtgtgaatcctagtggcgtaatccaagattttatatttttttgtgatgctgttgca
tcatggattaatcccaaagacgacctcagagacatgttctgtaagatccttcatggattt
aaaaaccaagttggggatgaaaattggaggcgattctctgaccagtttcctcttccctta
aaagagcgtcttgcggctttttatggtgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (1)   
   RefSeq(pep) (8)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (16)   
   Pfam (16)   
All databases (46)   

Download RDF
DBGET integrated database retrieval system