KEGG   Rattus norvegicus (rat): 309338
Entry
309338            CDS       T01003                                 
Symbol
Cstf2t
Name
(RefSeq) cleavage stimulation factor subunit 2 tau variant
  KO
K14407  cleavage stimulation factor subunit 2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    309338 (Cstf2t)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    309338 (Cstf2t)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     309338 (Cstf2t)
    U7-dependent histone pre-mRNA processing factors
     309338 (Cstf2t)
SSDB
Motif
Pfam: CSTF2_hinge RRM_1 CSTF_C RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 309338
NCBI-ProteinID: NP_001101056
RGD: 1310026
UniProt: A6I0Z3
Position
1:238366042..238369608
AA seq 629 aa
MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
IMDPEIALKILHRKIHVTPLIPGKSQPVSGPGPGGPGGPGGPGGPGPGPAPGLCPGPNVM
LNQQNPAPQPQHLPRRPVKDIPPLMQTSIQGGIPAPGPIPAAVPGPGPGSLTPGGTMQPQ
VGMPVVGPVPLERGQMQISDPRPPMPRGPMPSGGIPPRGLLGDAPNDPRGGTLLSVTGEV
EPRGYMGPPHQGPPMHHGHDNRGPASHDMRGGPLAADPRMLIGEPRGPMMDQRGLPMDGR
GGRDSRGMEARPMETEVLEPRGMERRMETCAMETRGMEARGIDARGLEMRGPGPSSRGPM
TGGIQGPGPINMGAGGPQGPRQVPNIAGVGNPGGAMQGAGIQGAGMQGAGMQGGGMQGAG
MQGGGMQGAGMQGGGMQGAGMQGASKQGAGQPSSFSPGQSQVTPQDQEKAALIMQVLQLT
ADQIAMLPPEQRQSILILKEQIQKSTGAS
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgtcgagtttggcggtcagagacccagccatggatcgatcactgcgttcggtgttcgtg
gggaacattccgtatgaggcgacggaggagcagttaaaggacattttctcggaggttggt
tcagttgtcagtttccgtctcgtctacgatagagagacaggaaagcccaagggttatggc
ttctgcgagtaccaagaccaggagactgcgcttagtgccatgcggaacctcaatgggcga
gaatttagtgggagagcgcttcgggtggacaatgctgccagtgaaaagaacaaggaggag
ttaaaaagcttaggcccggcagcccccatcattgactcaccctatggggaccctattgat
ccagaagatgctccagaatcgattactagggcagtcgccagcctgcccccagagcaaatg
tttgagctgatgaagcaaatgaagttgtgtgtccaaaacagtcaccaggaagctcgaaac
atgctacttcagaacccacaattggcgtacgctctgctgcaggcacaagtggtgatgaga
atcatggatccagagattgcactgaaaattttgcatcgtaagatccatgtcacaccactg
atcccaggcaaatcacagcctgtctctgggcctggccctggtgggcctggtggccctggt
ggccctggcggccctggccccggccctgcccctggcctctgcccaggacctaacgtcatg
ttgaaccaacagaatcctgcccctcagcctcagcatttaccaagaagacctgtgaaggac
attcctcctctgatgcagacctcgatccagggcggaattccagctccggggccaatacca
gctgcagttcctggacctggacctggttccttaaccccgggaggaaccatgcagccacag
gttggcatgccagtggttggtccagtgcccttagagcgaggacagatgcagatatcagat
cctagacctccaatgcctcgtggacccatgccttctggtggcatccctcctcgaggacta
ctgggagatgctccaaatgacccgcgtggaggaactttgctctcagtgactggagaagta
gagcccagaggctatatgggaccaccccatcagggtcctccaatgcatcatggtcatgac
aaccgtggccctgcctcacatgatatgagaggaggaccgttggcagcagatcccagaatg
ctgattggagaacccagaggtcccatgatggatcaaagaggtctacctatggatggtaga
ggaggaagagactctcgagggatggaggcccggcccatggaaacggaggtcttggagcca
cgaggaatggagagaagaatggagacctgtgcaatggaaaccagagggatggaagcaaga
ggcatagacgcaagaggactggagatgaggggccctggccctagttcccgaggtccgatg
actggtgggatccagggtcctggccccattaatatgggggcaggtggccctcagggacct
cgacaggttccaaacattgcaggagtgggaaatcctggaggtgccatgcagggggcaggt
atacaaggagcaggaatgcagggggcaggtatgcagggaggagggatgcagggggcaggc
atgcagggaggagggatgcagggggcaggcatgcagggaggagggatgcagggggctggc
atgcaaggagccagtaagcaaggtgcgggccagcctagtagttttagcccggggcaaagc
caggtaactcctcaagatcaagaaaaagcagctttgatcatgcaggttcttcagctgact
gcagatcagattgccatgctgcctcctgagcaaaggcagagcattttgattttaaaggaa
caaatccagaaatctacgggtgcttcttga

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