KEGG   Rattus norvegicus (rat): 309441
Entry
309441            CDS       T01003                                 
Symbol
Twnk
Name
(RefSeq) twinkle mtDNA helicase
  KO
K17680  twinkle protein [EC:5.6.2.3]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno05017  Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:rno00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    309441 (Twnk)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:rno03029]
    309441 (Twnk)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     309441 (Twnk)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial DNA replication factors
   Mitochondrial DNA maintenance factors
    309441 (Twnk)
SSDB
Motif
Pfam: AAA_25 DnaB_C ATPase AAA_22 AAA_16 AAA_29 T2SSE AAA_23 AAA_19 TsaE ABC_tran AAA_33 nSTAND3 SMP_C2CD2L RsgA_GTPase cobW
Other DBs
NCBI-GeneID: 309441
NCBI-ProteinID: NP_001101069
RGD: 1307884
Ensembl: ENSRNOG00000014935
UniProt: A6JHH4
Position
1:253817074..253823958
AA seq 683 aa
MWLLLRRAYPLRILLPLRGEWMGRRGLPRSLAPGPPRRRYRKEALPALEVPVSPVTTTEI
RQYLRAHGIPFQDGHSCLRAPSPFVAPSDIKNQKKDATTSFCLFIDKTTGHFLCMTSLAE
GSWEDLQASVEGRGDGAKEGILLGEGPEAEDREEVLRIWNRAIPLWELPDPQETQLARVM
FGLTKVTDDTLRRFNVRYLRSTRSLVFPWFTPGSSGLRGLKLLGVEGQENGVQYVETTIP
RPGVYHNLFGLPLIGRRDTEVVLTSRELDSLALSQSTGLPTLSLPRGTVCLPPALLPYLE
QFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVRPGNQQPRPLEALNQGLSLPRILRTA
LPAWHKSIVSFRQLREEVLGELSNVDQAAGVRWSRFPDLNRLLKGHRKGELTVFTGPTGS
GKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQFAVTRLEEQLDKYEEWADRFE
DLPLYFMTFHGQQSIRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSTDRIAAQDYIV
GAFRKFATDNSCHVTLVIHPRKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPG
KRYLQVSKNRFDGDVGVFPLEFNKSSLTFSIPPKSKARLKKIKDDNGLVAKKSSSGKKGS
AHQNSETCIGQDPCQPDTSPSSR
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgtggctccttctccggcgtgcttatcccctccggatcttgctgccactgcgtggggag
tggatgggtaggagaggcctgccccgaagcttggctccaggccctccccgaagaaggtac
agaaaagaagcgcttccagccttagaggtaccagtatcacctgtgactacaactgaaatc
cgccaatatttacgagcacatgggatccccttccaggatggccacagctgccttcgagca
ccaagtccctttgtggcaccctcagacatcaaaaatcagaagaaggatgctaccacttcc
ttctgcctcttcatcgacaagaccacaggacactttctctgcatgaccagcctagcagaa
gggagctgggaagacctccaggccagtgtggagggacgaggcgatggggccaaagaggga
atcctacttggggagggcccagaagctgaggacagggaggaggtcttgagaatctggaac
cgagccatacctctttgggagctgcctgatccccaggaaacccagctagctcgtgtgatg
tttggccttaccaaggtgacagatgacacactcaggagattcaatgtccgctatcttcga
tctactcgaagtctggtcttcccttggttcacccctgggagctcaggattacgtggcctg
aagctactaggggttgagggtcaggaaaatggagtacagtatgtagagaccaccattccc
cggcctggtgtctatcacaacctatttggattacccctgatcggccgtagagacactgag
gtggtcctgacaagtcgagagctggacagcctggccttgagccagtccacggggctgcca
accctttccctaccccgaggaacggtctgcttacccccagccctactcccttacctcgaa
cagttccggaggattgtgttctggctaggggatgaccttcgatcgtgggaagctgccaaa
ctgtttgcccgaaaactgaaccccaagcgatgctctttggtgaggcctgggaaccaacaa
cctcgtcccctggaggccttaaaccaaggcttaagtcttccccgtattctccgtactgcc
ctccctgcctggcacaagtctattgtgtcttttcgccagctccgagaagaggttttagga
gagctatcaaatgtggaccaagcagccggtgtccgttggagccgattcccagaccttaat
cggctgctgaagggtcatcggaagggcgagctgacggtctttacagggccaacaggcagt
ggcaagacaacattcatcagtgagtatgccctggacttgtgtacccagggagtgaacaca
ctgtggggtagctttgagatcagcaatgtgagactagcccgggtcatgctgactcagttt
gctgtgacacggctagaagaacaactggacaagtatgaagagtgggcagaccgttttgag
gacctgcctctctatttcatgactttccacggacaacagagcatcaggtctgtcatagac
acaatgcaacatgctgtctacgtctatgacgtttgtcatgtagtcatcgacaacttgcag
ttcatgatgggtcatgagcagctctctactgacaggatcgcagctcaagactacattgtt
ggagcctttcggaagtttgccacagacaatagctgccacgtgactctggttattcaccca
cggaaagaagatgacgacaaggaactacagacagcatccatttttggctcagccaaagcc
agccaagaagcagacaatgttctgatcttgcaggacaggaagctggtgactgggcctggg
aaacggtatctgcaggtgtccaaaaatcgctttgatggagacgtaggcgtcttcccactt
gagttcaacaagagttcccttaccttctccatcccacctaagagcaaagcccgactcaag
aagattaaggatgacaatggactagtggccaagaagtcctcctctggaaaaaaagggtct
gcgcaccagaactctgagacttgcataggccaggacccctgccagccagatacctccccg
tcctcaaggtga

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