KEGG   Rattus norvegicus (rat): 309458
Entry
309458            CDS       T01003                                 
Symbol
Pdcd11
Name
(RefSeq) protein RRP5 homolog
  KO
K14792  rRNA biogenesis protein RRP5
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rno03009]
    309458 (Pdcd11)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    309458 (Pdcd11)
SSDB
Motif
Pfam: S1 Spt6_S1 TPR_14 Suf TPR_19 TPR_15 TPR_6 DUF2110 NRDE-2
Other DBs
NCBI-GeneID: 309458
NCBI-ProteinID: NP_001101074
RGD: 1304933
Ensembl: ENSRNOG00000020304
Position
1:255922198..255963336
AA seq 1876 aa
MANLEESFPRGGTRKPHKSEKSSQPVVEQDNLFDISTEEGSVKRKKSQKGPAKTKKLKIE
KRKSNKSMKEKFEILSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYT
QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLDVTESGKKSVKLSVNPKRVNKVLS
AEALRPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLT
CVVEELKSNGGVVSLSVEHSQVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNF
LTFFTGLVDFMHLEPKKMGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRIS
YQQLGTVLDDASVEGFFEKAGAIFRLRDGVLAYARLSHLSDSKKAFSAEAFKLGSTHRCR
IIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLV
PSMHLADIMMKNPEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAK
PGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCE
PSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVNTGQLVDVKVLEKTKNGLEVAILPHNI
PAFLPTPHLSDHVANGPLLHHWLQTGDTLHRVLCLSQSEKHILLCRKPALVSTVEGGQDP
KSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVV
AKVTNVDESKQRMLLSLRLSDCSLGDSASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTL
ADMTPGMVLDAMVQEVLENGSVVFGGGPVPDLILRASRYHRAGQELEPGQKKKVVVLHVD
ALKLEVHVSLHQDLVNRKARKLRKNSRHQGIVQHLEESFAVASLVETGHLVAFSLISHLN
DTFHFDSEKLRVGQGVCLTLKTTEPGVTGLILAVEGPASKRIRMPAQRDSETVDDKGEEE
EEEEEEDLTVRSKKSHSLAIGDKVTGTIKSVKATHAVVTLDDGFIGCIHVSRILDDVPEG
VSPTTTLKAGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGDYRALNTH
SVSPMEKIRQYQAGQTVTCFLKKYNVMKKWLEVDIEPDIRGRIPLLLTSLSFKVLKHPDK
KFQIGQAIKATVVGPDIPRAFLCLSLIGPYKLEEGDVAMGRVLKVLPNKGLTVSFPFGRI
GKVSVFHLSDSYSEEPLTDFCPQKIVRCYILSTAHRMLALSLRSSRTNKETKSKIEDPEV
NSIEDIQAGQLLRGYVKSILPSSVVIGLGPSVMGLVKHSHVSQCVSREKELYDKCLPEGK
LVTARVLCVNPKKNLIELSLLPSDTGKPDVFSASPEPPLPKQEGREGGTEKGLKGESKRS
QRRREKNQKMREESGLYSQEKKEPRKSQRGGQSKRERQESESEQELVNKRPKKSGAPEDD
DSGVEVYYREGEDEVEEPKVPPGGKQSKPTEVPRLQLSKGFIWDVGLDSLTPALPLRGES
SDSEEDEQPHQAKKKKGKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSP
NSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQES
LAKVFERAVQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVL
GRSQAGASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAKAIFENTLTTYPKRTD
VWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKA
KALEYVEAKSSALEDQ
NT seq 5631 nt   +upstreamnt  +downstreamnt
atggcaaacctggaggaaagcttcccccgagggggtacacggaaaccccacaaatcagag
aaatcgtcccagccggtggttgaacaagacaacttatttgacatttccacagaagaaggt
tccgttaaaaggaaaaagagccagaaagggccagcaaaaacaaaaaagttgaaaattgag
aagagaaaatccaataagtctatgaaagagaagtttgaaattcttagtcttgagtcctta
tgtgaggggatgcgaattttggggtgtgtgaaagaggtgaatgagctggagctcgtggtc
agtcttcccaatggcctccaagggtttgtgcaagtgaccgaaatctgtgatgcctacacg
cagaagctgaacgagcaggtggcacaagaggagcctctggaggacctactccgcttgcct
gagctcttctcacctggaatgctagtgaggtgtgtggtgagcagcctggatgtcacagag
agtggcaagaagagcgttaagctttccgtgaaccccaaacgtgtcaacaaagtgctgagt
gccgaggccctgaggcctggcatgctgctgacaggtacagtgtccagcctggaagaccat
ggctacctagtggacattggggttgatgggaccagagcttttctgtcactacaaaaggca
caagaatacattcgacagaagaacaaaggtgctaagttcaaagtcggccaatacctgacc
tgtgtggttgaagagctgaaaagcaacggaggagttgtgagtctctctgtagaacactcc
caggtttcttctgcctttgcaaccgaggagcagagctggaacctgaataacttactgcca
gggctggtggtcagggcccaggtgcagaaggtgactcagtttggactccagctaaatttc
cttacgttcttcacgggtctggttgacttcatgcacttggagcccaagaaaatggggtct
tattcttcaaagcaaacagtaaaggcctgcatcctctgtgtccatcctcgtaccagagtt
gtgcgactgagcctgcggcccatcttcctgcatcctggacgtccactcacccgcatctct
taccagcagctagggactgtgctggacgatgcttctgttgagggttttttcgagaaggct
ggggccatcttcaggctgagggatggggtactggcctatgcccggctcagccatctctct
gattctaagaaggcattcagtgctgaggccttcaaactggggagcactcacagatgcaga
atcattgactacagccaaatggatgagctggccctgctgtctctgcggaaatcaattatt
gcagctccgtttcttagatatcaggacatcaagacagggacaatagtaaagggcaaggtg
ctggctttgaagccatttgggatgctggtgaaggtgggtgagcaaatgagaggcctggta
ccctccatgcacctggctgacatcatgatgaagaacccagagaagaagttcaacacaggg
gacgaggtcaagtgcagggttttgctctgtgatcctgaagccaagaagctaataatgacc
ctgaagaaaacccttgtcacatccaaactacctgccattacctgctatgaggatgccaag
cctggcctacagacacatggtgttatcataagggtcaaggactatggctgccttgtgaag
ttctacaatgatgtgcaggggctagtgcccaagcacgagctcagtgcccagcacatccct
gacccagagagggtcttttacactggccaggtggtcaaggtggcagtgctgaactgtgag
ccttccaaagagaggatgctcctgtcctttaaactgttgagtggttcggagccaaaggac
gagagtgttaagaacagtaagaagaaaggaagcaccgtgaacactgggcagttggtggat
gtgaaggttctggagaagaccaaaaatgggctggaggtggccatcctgccccacaacatc
cctgcattcctcccgacgcctcacttgtctgaccatgttgccaatggcccgttgttgcat
cactggctccagacaggtgacacccttcaccgagttctgtgtctgagccagagcgagaaa
cacattcttctctgcaggaagccagctttggtctccacagtagaaggtggccaggacccc
aagagcctctcggaaatccagcccggaatgctgctcattggttttgtgaagagcattaag
gactatggagtgttcgtccagttcccctcaggtcttagtggactgtcccccaaaactatc
atgagtgacaagttcgtaaccacgccaagtgaacactttgtggagggtcagacagtcgtt
gctaaggtgaccaatgtggatgagtcgaagcaaaggatgttgctgtctctgcggctgtca
gactgcagtctgggggactcggccagcaccagcttcctcctcctgtgccagtgcctggaa
gagctgcagggcattcgaagccttatgagcaaccaagactcggtattgatccagacactg
gctgacatgaccccagggatggtccttgatgccatggtacaagaggtgttggaaaatggt
tcagtggtgttcggcgggggccctgtgcctgacctgatcctgagagccagcagataccac
cgggcagggcaggagctggagcctgggcagaagaagaaagtcgtggttctgcatgtggac
gcgttgaagttggaggtccatgtttcccttcaccaggacttggtgaataggaaagctaga
aagctgagaaaaaacagcagacaccagggaattgtacagcatctggaagagtccttcgct
gtggcctccttggtagagactggccaccttgtggctttctctctgatctctcacctcaac
gataccttccactttgactctgagaagctacgtgtggggcagggtgtctgcctcaccctc
aagaccacagaaccaggagtgactggtctgattttggctgtggaaggaccagcttctaag
agaatcaggatgccagctcagagggattcagagacagttgatgacaaaggggaggaagag
gaggaggaagaggaggaggacttgactgtgaggtctaagaagagtcatagcctggctatt
ggggacaaagtcaccgggaccattaagtctgtgaaagccacacatgctgttgtgacccta
gatgatggcttcattggttgtatccatgtatcccgcattctagatgatgtcccagagggc
gtctctcctacgaccacactgaaagctgggaagaaagtcactgcgagagtgatcggtggg
cgagatgtgaagacatctaagtttcttccaataagtcaccccagatttgttctgaccatc
ctggagctgagtgttcggccaagtgagttgaagggtgactacagggctcttaatactcac
tctgtgagccccatggagaagattaggcagtaccaggctggccagactgtgacttgcttc
ttaaagaagtacaatgtgatgaagaagtggcttgaagtggacattgaaccagacatccga
gggagaattcccttgttgctcacttcgctcagcttcaaggttctgaaacacccagacaag
aagttccagattgggcaggccatcaaggccactgttgtcggcccagacattcccagggct
ttcttatgtctgtcactcataggtccttacaaacttgaggaaggtgacgtggccatgggc
cgagtgctaaaggtgttgcccaacaagggactgactgtctccttcccctttgggaggata
gggaaagtcagtgtgtttcatttgagtgactcctactccgaggagcccctgacagacttc
tgcccccagaagattgtccgatgttatatcctgtcaacagcacaccgtatgctggccctg
tcactgcgatcatccaggacaaacaaagagacaaaaagtaaaatagaagacccagaagtg
aactccatcgaggacatccaggcagggcagctccttcggggctatgtgaagtccatcctg
ccgagtagtgtggtcataggccttggaccttcagttatgggtctggtcaagcactcacat
gtctctcagtgtgtctcacgtgagaaagagctttacgacaaatgcctccccgagggaaag
ctggtcactgccagggtcctatgtgtgaaccccaagaagaacctgatagagctgtcgctc
cttcccagcgacactgggaagccggatgtgttctctgcttccccagaaccacctcttcct
aaacaagaggggagagaaggtgggactgagaagggcctgaaaggagaatcgaagaggagt
cagagaaggagagagaagaaccagaagatgcgagaagagtctgggctgtacagccaggag
aagaaagaaccccggaagtcacagaggggtgggcagagcaagcgggagcgccaggagtct
gagagcgagcaggaactagtgaacaagaggccaaagaagtctggggcaccagaagatgac
gacagtggtgtggaagtgtactaccgggaaggagaggatgaggtggaggagccaaaggtg
cctcccgggggaaaacagagcaaacccacagaggtgccccggctgcagctctctaaaggc
ttcatctgggacgtggggctcgactctctgactccagccctgccactccgaggagagagc
tcagacagcgaggaggatgagcagccacaccaagccaagaagaagaagggcaagaaggaa
agggagctggagaagcagaaggcagagaaggagctgtcacgcattgaggaggcactcatg
gaccccgggcgacagccagaatccgcggacgactttgacaggctggtgctgagctccccc
aacagctccatcctttggctgcagtacatggctttccacctccaggccaccgagattgag
aaggcccgggctgtagctgagagggccctgaagaccatctcgttcagagaggagcaggaa
aagctgaacgtgtgggtggctctgctgaacctagaaaacatgtacggctctcaggagtcg
ctggccaaggtcttcgagcgagctgtgcagtacaatgagcctctcaaggtcttcctgcac
ctggctgacatctacaccaagtccgagaagttcaaggaagctggtgagctgtacaaccgg
atgctgaaacgattccggcaggagaaggctgtctggatcaaatatggtgcctttgttttg
gggaggagtcaggccggggccagtcaccgcgtgctgcagcgagccctggagtgcctgccc
accaaggaacatgtggatgtgattgtcaagtttgcccagctagagttccagctcggggat
gtggagcgggctaaagccatttttgaaaacacactgaccacctacccaaaacgcacagat
gtctggtcagtctacatcgacatgaccatcaagcacggcagccagaaagaagtcagggac
atctttgagcgggtcattcatctgagcctggcccccaagaggatgaagttcttcttcaag
cgctacctggactacgagaagcagcatggcaccgaaaaggacgtgcaggctgtcaaggcg
aaggccttggagtatgtggaggccaagagctcggcgctggaggaccagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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