KEGG   Rattus norvegicus (rat): 309591
Entry
309591            CDS       T01003                                 
Symbol
Trim39
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39
  KO
K12015  tripartite motif-containing protein 39 [EC:2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    309591 (Trim39)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     309591 (Trim39)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    309591 (Trim39)
SSDB
Motif
Pfam: SPRY PRY zf-C3HC4_4 zf-C3HC4 zf-RING_UBOX zf-B_box zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 zf-RING_6 zf-RING_5 zf-rbx1 zf-RING_10 zf-ANAPC11 Prok-RING_4 Sina_RING zf-Nse U-box TRAF3_RING Baculo_IE-1 Fmp27_WPPW MRP-L28
Other DBs
NCBI-GeneID: 309591
NCBI-ProteinID: NP_998727
RGD: 1303115
Ensembl: ENSRNOG00000000785
Vega: OTTRNOG00000001486
UniProt: Q6MFZ5 A6KR95
Position
20:2008528..2022383
AA seq 488 aa
MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQTVKRKIRDESLCSQHHEPLSLFCYE
DQEAVCLICAISHTHRAHTVVPMDDATQEYKEKLQKCLEPLEQKLQEITCCKASEERKPG
ELKRLVESRRQQILKEFEELHRRLDEEQQTLLSRLEEEEQDILQRLRENAAHLGDRRRDL
AHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSHFPRQYFALRK
ILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPQRFTFYPCVLATEGFTS
GRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWNGDKYAATTTPFTPLH
IKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRKNAAPLT
IRPPTDWE
NT seq 1467 nt   +upstreamnt  +downstreamnt
atggcagagacaagtctgttagaggctggagcctctgcagcctccacagccgctgctctg
gagaacttgcaggtagaggcaagctgttctgtgtgcctggagtacctgaaggagccggtt
atcattgaatgtgggcacaacttctgcaaagcgtgtattacccgctggtgggaggaccta
gagcgggacttcccttgccctgtctgtcggaagacatcccgataccggagcctcaggcct
aaccgacagctaggcagcatggtggaaatagccaagcagctccagacggtcaagcggaag
atcagagacgaaagcctctgctcccagcaccatgaaccccttagccttttctgctacgaa
gaccaggaggctgtctgtctgatatgtgcaatttcccatacccaccgggcccatacggtc
gtgccgatggacgatgctacacaggagtacaaggagaaacttcagaagtgcctggagccc
ctggaacagaagctgcaggagatcacctgctgcaaagcctcagaagaaaggaaaccaggg
gaactcaagagactggtagagagccgccggcagcagatcctaaaggagtttgaggagctg
cacaggcgactggacgaggaacagcagacgctgctctcccggctggaggaggaagaacag
gacattctacagagacttcgagaaaacgctgctcaccttggggataggcgccgggacctt
gcccacttagctgctgaggtggagggcaagtgcttacagtcaggcttcgagatgcttaag
gatgtgaaaagtaccctagaaaaatgtgagaaggtgaagaccatggaggtgacttcagta
tctatagagctggaaaagaacttcagccatttcccccggcagtactttgccctaaggaaa
attcttaaacagctaattgcggatgtgaccctggaccctgagacggctcatcctaacctt
gtcctgtcagaggatcggaaaagtgtcaagtttgtggagacaagactccgagacctccct
gacacaccacagcgtttcactttctacccttgtgtcttagctactgaaggcttcacctca
ggtcgacactactgggaggtggaggtgggtgacaagacccactgggcagtaggagtatgc
cgggactctgtgagcaggaagggtgaactgactccactcccggagactggctactggcgt
gttcggctgtggaatggggacaagtatgcagccaccaccacgccttttacccctttgcac
atcaaggtgaaacctaagcgggtaggcatattcctagactatgaggctggcacactgtct
ttttacaacgtcacagaccgctcacatatctacaccttcactgatactttcactgaaaaa
ctttggcccctcttctacccagggatccgagccggtcggaagaatgctgcaccacttacc
atcagacccccaacggattgggaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (22)   
   Pfam (22)   
All databases (39)   

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