KEGG   Rattus norvegicus (rat): 309595
Entry
309595            CDS       T01003                                 
Symbol
Mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    309595 (Mdc1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    309595 (Mdc1)
SSDB
Motif
Pfam: BRCT_2 FHA BRCT RTT107_BRCT_5 Yop-YscD_cpl
Other DBs
NCBI-GeneID: 309595
NCBI-ProteinID: NP_001159747
RGD: 1559468
Ensembl: ENSRNOG00000032813
UniProt: Q5U2M8
Position
20:complement(2898496..2914960)
AA seq 1279 aa
MENTQVIDWDAEEEEETEISSGSLGYSVEPIGRLRFFSGTHGPERDFPLYLGKNVVGRSP
DCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPRVLAPGVSHRLRDQEL
ILFADFPCQYHRLNVPPPLVPRSLLTIEKTPRIRGRSQNSRVLLAEDSEEEGDFPSGRSV
ANGSRNTASPSATVVPESDEEGSSPGPSVPGPSSPFGLGSDTDESQGQQPGVEESSLADN
SGAAGEPEQPEVNGVTTGTLAQPTKDKFKDTKMKEEAGSAGVPVGSVVEGSPTLGEDSDT
EADEERQPSGSGDSDTDVEEERVPVKKNQVLLGVGIGGPGARGVAHLQDSPTGSDTDVEE
DKTALAAPPERSHTAMVINSDTDEEERGEEEEVSAALTLARLKERGIALWSGEPGTEEVK
SQPQVLVERSQSASGRDSDTDVEEGSSGGKREIVPDSPMDVDETLTVTQPESQPPCRPND
VDEDVDMSSPGSHLEGKKASSALVDKNRAQVEEEVPGPSVTLGEKHQVPLEGAQPPEEAR
ETAVQEGSSSPVADIRMSQQPVAEDAGTECAAAVSEQKSALEVGAQSRSPAAPVEQVVVR
TDTSGDPTLPQREGAQTPTGREREAHVGGTKHAKECCDEPEDLCLSATQCFVEGESQHPG
AVQSLEDEPTQVFPCLPQEPGPSHLSLPTPGADTLDVPWEVLATQPFCLREQTETSEPID
THEAHGSQPSLPGEPPGHQHPVPTSLDHTELLRIDDREMQTVEKAMGHLSCQMMPDGKAS
GDDPEPSDHRLFSPVPEASASPQSLLTSQSQKQSTPQPMFPTSSSELALPETLHTKPNVR
PRRSSRMTPSPHSSAALKPYTTCPTNQPAASRPTSRPTRGRANRSSTRTPELIVPTGPEL
QPSTSTEQPGIPNLTSQVTEGRAHSTSVNMPEPVLTGPEAQPLTSAEQSVTSNLNPRAQP
LTLEPVPQTSHQRRRRATGKQGSRTAPVGPKSYSTPAEPEPQSSASQSSGASEADSPHQK
RPRRQVTQKTVVVKEEDPGEIQVKEEPQETAIPTPGKRKRDPAEGETQGNPTRSRRTKPN
QEAAAPKVLFTGVVDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCAVGKGIPI
LSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLSRARERRLLEDYEIHVTPGV
QPPPPQMGEIISCCGGTVLPSMPHSYKLHRVVITCTEDLPRCAIASRLGLPLLSPEFLLT
GVLKQEATPEAFVLSNLEM
NT seq 3840 nt   +upstreamnt  +downstreamnt
atggaaaacactcaggtgattgactgggatgctgaagaagaggaagagacagaaatatcc
agtggatccttggggtatagtgtggagcctatagggcggctgcgattcttcagtggtacc
catggaccagaacgagatttcccactctaccttggcaagaatgtagttggtcgaagccct
gactgctctgtggccctgccttttccatccatctccaaacagcacgcagtgattgaaatc
tcagcttggaacaaagcccctatccttcaggattgtgggagcctcaatggcactcaaatc
gtaaagcctcctagggtcctagctcctggagtgagccatcgtctgagggaccaggaatta
attctgtttgcagactttccctgccagtaccatcgcctgaatgtcccaccacccttggtc
cctcggagtcttctaactatagagaagacccccagaatacggggaagatcccaaaattcc
agagttttgttggctgaggattcagaggaagaaggagattttccttctggaaggtctgtg
gcaaatggatcaaggaatacagcatccccttcagcaacagtagttccagaaagtgatgaa
gagggctcttctccaggcccaagtgtccctgggccatcttcaccctttggtttgggaagt
gacacagatgaatcacaaggtcagcaaccaggagtagaggaatcttctttagctgacaac
agtggtgccgcaggggagcctgagcagcctgaagtgaatggagtgacaactggcacactg
gctcagcctaccaaggacaagttcaaggacacaaagatgaaggaggaggcaggcagtgca
ggggttccagttgggtcagttgtggaggggagccccactcttggggaagacagtgacaca
gaagcggatgaagagcgtcagccttctggttctggggatagtgatacggacgtagaagaa
gagagggtccctgtgaagaagaaccaagtactgcttggggttggtatagggggtccagga
gcacgtggtgtggcacatctgcaggacagcccaactggtagtgacacagatgtggaggag
gacaagactgcactggctgcccctccagagagaagccacacagccatggtgatcaacagt
gatacagacgaggaggagaggggtgaggaggaagaggtctcggcagcactcaccttggcc
cgtctgaaggagagaggaattgctttgtggagtggagagccaggcacagaggaggtcaag
tcccaaccacaggtccttgtagaacgaagccagagtgcctctgggagagacagtgacact
gacgtggaggagggatcctcagggggaaagagagagattgtccctgacagccccatggat
gtagatgagactcttactgtcacacagccagagagccagcctccctgtaggcccaatgat
gtagacgaggatgtggatatgagctcccctggcagccatctagagggaaagaaggcctcc
tctgctctggtagacaagaacagagcacaagtggaggaggaagtcccagggccatctgtt
accctgggggagaaacaccaggtgcctctagagggagcccagcctcctgaggaagcccgg
gaaacagctgtgcaggaaggctcatcctcaccagtggcagacataagaatgagccagcag
ccagtagcggaagatgctgggacagagtgtgctgcagctgtttctgaacagaaaagtgct
cttgaggtcggggctcagagcaggtcacctgcagcacccgtggagcaggtggtggtacgc
acagatacttcaggggatcctaccctgccacagagagagggagcccagacccccacagga
agggaaagagaagcacatgtgggcgggaccaagcatgccaaagagtgctgtgatgaacct
gaggatctgtgcctttcagccacccagtgctttgtggaaggggagagccagcacccagga
gctgtccagagtttggaagatgagcctacccaagtcttcccatgccttccccaagagcct
ggaccttcccatctcagcctcccgactccaggtgcagataccttggatgtgccttgggaa
gtcttggctacacagccgttctgtctgagagaacagacagagacctctgagcccattgac
acccatgaagctcatggatctcaaccatctctacctggggaaccaccaggacaccaacat
ccggtccctaccagcctagatcacacagagctgttgagaattgatgacagagagatgcag
actgtggagaaagccatgggccacctaagttgccagatgatgccagatggaaaggcttcc
ggggatgacccagagccctcagaccatcgcctgttttctccagtgcctgaagcttcagct
tcacctcagagtctcctcacctctcagagccaaaagcaatctacacctcagcctatgttt
cccacttcttcttctgagctagcccttcctgagactcttcacacaaagcctaatgtcagg
ccacggcggtcctccaggatgaccccctccccacattcctctgctgcccttaagccttat
actacctgccccacaaaccagcctgctgcttctaggccaacatctcgccccactcggggc
agggcaaataggtcctctaccaggaccccagaactgattgtccctacaggccctgagctc
cagccttccacctccacagaacagcctggcattccaaacctcacttctcaggtcactgag
ggcagggcacatagtacctctgttaatatgcctgaaccagttctcacaggtcccgaagcc
cagcctctcacctccgcagaacaatctgtcacctcaaacctcaatcctcgggcccagcct
cttaccctggagccagttccacaaaccagtcaccaaaggaggcgaagggctactgggaag
cagggctcccgcacagctcctgttggtcctaagtcttactctacccccgctgaacctgaa
ccccagtcttcagccagccaaagctcaggagcatcagaagcagattcaccccatcaaaaa
cgtccccgaagacaagtcacccagaaaactgtagtcgtcaaggaagaagatcctggagaa
atacaagtgaaggaagagcctcaggagacagcaattccaacaccaggcaagagaaagagg
gaccctgcagagggggaaacccagggaaacccaactcgaagccggcgaactaagcctaac
caggaagcagcagcccccaaggtactgttcacaggagtggtggattctcgtggagagcgt
gcagtgctggctctaggaggcagtctggccagctcagtaaatgaggcctcccacttggtt
actgatcgcatccgcaggacagtcaagttcttgtgtgccgtggggaagggaattcccatc
ctgtccctgaactggctctatcagtcccgaaaggctggttgcttcttgccgcctgatgac
tacttggtgactgatcctgaacaagagaagaattttagcttcagccttcgggattccctg
agccgggctcgggaacgaagactactggaggactatgagattcatgtgacccctggagtg
cagccacctccacctcagatgggagagatcatcagctgctgtggaggcactgtcctgccc
agcatgccccattcctacaagcttcacagagttgtcataacgtgcactgaagacctacct
cgatgtgctattgcatctcgcctggggctacccctcctctctcctgagttcctcctgact
ggagtgctgaagcaggaagccacaccagaggcctttgtcctctccaatttggaaatgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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