KEGG   Rattus norvegicus (rat): 309596
Entry
309596            CDS       T01003                                 
Symbol
Vars2
Name
(RefSeq) valine--tRNA ligase, mitochondrial precursor
  KO
K01873  valyl-tRNA synthetase [EC:6.1.1.9]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    309596 (Vars2)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:rno01007]
    309596 (Vars2)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    309596 (Vars2)
Enzymes [BR:rno01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.9  valine---tRNA ligase
     309596 (Vars2)
Amino acid related enzymes [BR:rno01007]
 Aminoacyl-tRNA synthetase
  Class I (U)
   309596 (Vars2)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    309596 (Vars2)
 Prokaryotic type
    309596 (Vars2)
SSDB
Motif
Pfam: tRNA-synt_1 Anticodon_1 tRNA-synt_1g tRNA-synt_1_2 tRNA-synt_1e tRNA-synt_1b tRNA-synt_1f
Other DBs
NCBI-GeneID: 309596
NCBI-ProteinID: NP_998728
RGD: 1303122
Vega: OTTRNOG00000001596
UniProt: Q6MG21
Position
20:3081869..3092907
AA seq 1065 aa
MPHLPLASFRPPLWGLRPSWGLARPRALCTQPEPHGSPVSRRNREAKQKRLREKQAALEA
GLAEKSKTPAVPTKAWSHKEVVLYEIPTRPGEKKDVSGPLPPAYSPQYVEAAWYQWWVRE
GFFKPEYQARLPQATGETFSMCIPPPNVTGSLHIGHALTVAIQDAFVRWHRMRGDRVLWI
PGSDHAGIATQAVVEKQLWRERRVRRHELSREDFLRAVWQWKQEKGGEIYEQLCALGASL
DWDRECFTMDAGSSAAVTEAFVRLYDLGLLYRNRQLVNWSCTLRSAISDIEVESRPLPGR
TVLRLPGCPIPVSFGLLVSIAFPVDGDPGTEIVVGTTRPETLPGDVAVAVHPDDPRYTHL
HGRQLRHPLTGQHLPLITDTTVQPHVGTGAVKVTPAHSPADAEMGTRHGLTPLSVIAEDG
TMTSLCGDWLQGLHRFVAREKIMCTLRERGLFRGLQEHPMVLPICSRSGDVVEYLLKSQW
FVRCQEMGDRAAKAVESGALELWPSFHQKSWQHWFAHIGDWCVSRQLWWGHQIPAYRVGG
EKAEDDREECWVVGRSEAEARAAAAKQTGRPEAELTLERDPDVLDTWFSSALFPFSALGW
PQETPDLARFYPLTLLETGSDLLTFWVGRMVMLGTQLTGQLPFSKVLLHSMVRDRQGRKM
SKSLGNVLDPRDIISGQELQVLQAKLRDGNLDQGELAVAAAAQKKDFPYGIPECGTDALR
FALCSHGILGGDLHLSVSEVLNYRHFCNKLWNALRFILRALGDDFVPQPAEKVTPSSPMD
AWILSRLAFAANECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAVKPVLSSAPCPPGPP
QVLFSCADVGLRLLAPLMPFLAEELWQRLPPRQGGSMAPSICVAPYPSGHSLVSRGQESW
RQPELEHCFSRVQEIVQALRALRATYQLTRARPHVLLQSSDPGEQGLVQPFLEPLGVLSH
CGAVGFLPPGAAAPSGWALAPLGDTIKIYMELQGLVDPQSQLPRLAARRQKLQKQLDDLL
NRTVSDGPAERQQRISSLQLELSKLDQAASHLQQLMEEAPDAREL
NT seq 3198 nt   +upstreamnt  +downstreamnt
atgcctcatttacctctggcctctttccggccacctctctgggggctgaggccctcatgg
ggtctcgccaggccccgggcactttgtacacaaccggagccccacggctccccagtctct
cggaggaaccgtgaagccaaacagaagcgcctgcgggagaagcaggcggccctggaggct
gggctggctgagaagagcaagacacctgcagtgcccactaaggcctggagtcacaaggaa
gtagtattgtatgaaatccccacccggccaggtgaaaagaaagatgtttccgggcccctg
cctcctgcttacagcccccaatatgttgaagcagcctggtaccagtggtgggtgcgagag
ggcttcttcaaaccagagtatcaggcaaggctgccccaagctacaggggagaccttttcc
atgtgtatcccacctcccaatgtcacgggctccctgcacattggccatgcgctcacagtg
gcgatacaggatgcttttgtgcgctggcaccggatgcgtggggatcgtgtgctgtggatc
cccgggtcagatcatgcaggaattgctacacaggctgtggtggagaaacagctgtggagg
gagcggagagtgcggagacacgagctgagccgggaggacttcctcagggctgtgtggcag
tggaaacaggagaaaggaggggagatctacgagcagctgtgcgccctgggcgcctctctg
gactgggatcgagagtgtttcaccatggatgccggctcctcagcagctgtgacggaagct
tttgtgcgactctatgacctgggattgttgtaccggaaccgccagcttgtcaactggtca
tgtactctgagatcggccatctcagacattgaggtagaaagccggcccctacctggccgc
acggtgttgcggctgcccggctgcccaatccccgtgtcttttgggctcctggtttccatt
gctttccctgtggatggagaccctggcacagagattgtggtgggaaccaccaggccagag
accctgcctggagatgtggctgtggccgttcacccagatgacccaagatacacgcattta
catgggcgccagctccgtcaccctttgacaggacagcatctccccctcatcacagacacc
actgttcagccacatgtgggtacaggggcggtgaaggtgactcctgctcacagtcccgca
gacgctgagatggggacccggcatggcttgaccccactgagtgtcattgcagaggatggg
accatgacgtccctctgtggagactggctgcagggccttcaccgattcgtagcccgggaa
aagatcatgtgcacactgagggagcggggcctgttccggggcctacaggagcaccccatg
gtgctgcccatctgcagccgttccggggatgtcgtggagtacctgctgaagagccagtgg
tttgtgcgctgccaggaaatgggagaccgagctgccaaggctgtggagtcgggggctctg
gagctctggccctccttccaccagaagagctggcaacactggtttgcccacattggggac
tggtgtgtctcccggcagctgtggtggggccatcagattccagcctaccgggtcggcggg
gagaaagcagaggatgacagggaggaatgctgggtggttggacggtcagaggctgaggcc
agagcagcagcagcaaaacagacaggaagaccagaggcagagctgaccctggagagggac
cctgatgtcctggacacttggttctcttcagctcttttccccttctctgccttgggttgg
ccccaagagacgccagaccttgctcgcttctaccccctcacacttctggaaacgggcagt
gacctcctgacgttctgggtgggccgcatggtcatgctggggacccagctcactggacag
ctccccttcagcaaggtgctccttcactccatggttcgggacaggcagggccggaagatg
agcaagtccctggggaacgtgctagacccgcgggacatcatcagtgggcaggagctgcag
gtgctccaggccaagctgagagatggcaacttggaccagggagagctcgctgttgcagcc
gcagcacagaaaaaggactttccttacgggatccccgagtgtgggacggatgccctgaga
tttgcactgtgctcccatggaatcctgggtggcgacctgcacctgtcggtctcagaggtc
ctgaactaccgccatttctgcaacaagctctggaatgccctgcgctttatcctccgtgcc
ctgggggatgatttcgtgccccagcccgcagagaaggtaacgccctcctcccccatggac
gcctggattctgagccgcttggcctttgcggccaacgagtgtgagaggggcttcctcagc
cgggagctttcgcttgtcacccacaccctgtatcatttctggctccacaatctctgtgat
gtctacctggaagcggtgaagccagtgttgtcgagtgcgccctgtcccccaggaccccct
caggtcctgttctcctgtgcagatgtcggtctgcgcctcctcgccccgctgatgcccttc
ctggcagaagaactttggcagaggctgccccccaggcaaggtggctccatggctcccagc
atctgtgtggccccctaccccagtggtcacagcctggtgagtcgtgggcaggagtcctgg
cgccagccagagttggagcactgcttctcccgagtccaagagattgtacaggcactgcgg
gcgcttcgagccacctaccagctcacaagagcccgaccccatgtgctgctacagagctca
gacccaggagaacaaggcctagtccagcccttcctggaacctctgggcgtcctgagccac
tgtggggctgtaggattcctgcccccaggagcagcagctccctcagggtgggccctggcc
ccactgggtgacaccataaagatctacatggagctgcagggcctggtggacccccagagc
cagctacctcggctagctgcccggaggcagaagttacagaagcagcttgatgacctcttg
aaccggaccgtgtccgatggtcctgcagagaggcagcagaggatttcctccctccagctg
gaattgtcaaagctggaccaggcagcctctcacctacagcaactgatggaggaggctcca
gacgccagggagctctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (14)   
   RefSeq(nuc) (12)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (51)   

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