KEGG   Rattus norvegicus (rat): 309621
Entry
309621            CDS       T01003                                 
Symbol
RT1-Ba
Name
(RefSeq) rano class II histocompatibility antigen, B alpha chain precursor
  KO
K06752  MHC class II antigen
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04145  Phagosome
rno04514  Cell adhesion molecules
rno04612  Antigen processing and presentation
rno04640  Hematopoietic cell lineage
rno04658  Th1 and Th2 cell differentiation
rno04659  Th17 cell differentiation
rno04672  Intestinal immune network for IgA production
rno04940  Type I diabetes mellitus
rno05140  Leishmaniasis
rno05145  Toxoplasmosis
rno05150  Staphylococcus aureus infection
rno05152  Tuberculosis
rno05164  Influenza A
rno05166  Human T-cell leukemia virus 1 infection
rno05168  Herpes simplex virus 1 infection
rno05169  Epstein-Barr virus infection
rno05310  Asthma
rno05320  Autoimmune thyroid disease
rno05321  Inflammatory bowel disease
rno05322  Systemic lupus erythematosus
rno05323  Rheumatoid arthritis
rno05330  Allograft rejection
rno05332  Graft-versus-host disease
rno05416  Viral myocarditis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    309621 (RT1-Ba)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    309621 (RT1-Ba)
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    309621 (RT1-Ba)
   04612 Antigen processing and presentation
    309621 (RT1-Ba)
   04658 Th1 and Th2 cell differentiation
    309621 (RT1-Ba)
   04659 Th17 cell differentiation
    309621 (RT1-Ba)
   04672 Intestinal immune network for IgA production
    309621 (RT1-Ba)
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    309621 (RT1-Ba)
   05164 Influenza A
    309621 (RT1-Ba)
   05168 Herpes simplex virus 1 infection
    309621 (RT1-Ba)
   05169 Epstein-Barr virus infection
    309621 (RT1-Ba)
  09171 Infectious disease: bacterial
   05150 Staphylococcus aureus infection
    309621 (RT1-Ba)
   05152 Tuberculosis
    309621 (RT1-Ba)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    309621 (RT1-Ba)
   05140 Leishmaniasis
    309621 (RT1-Ba)
  09163 Immune disease
   05310 Asthma
    309621 (RT1-Ba)
   05322 Systemic lupus erythematosus
    309621 (RT1-Ba)
   05323 Rheumatoid arthritis
    309621 (RT1-Ba)
   05320 Autoimmune thyroid disease
    309621 (RT1-Ba)
   05321 Inflammatory bowel disease
    309621 (RT1-Ba)
   05330 Allograft rejection
    309621 (RT1-Ba)
   05332 Graft-versus-host disease
    309621 (RT1-Ba)
  09166 Cardiovascular disease
   05416 Viral myocarditis
    309621 (RT1-Ba)
  09167 Endocrine and metabolic disease
   04940 Type I diabetes mellitus
    309621 (RT1-Ba)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    309621 (RT1-Ba)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   309621 (RT1-Ba)
  Exosomal proteins of epithelial cells
   309621 (RT1-Ba)
  Exosomal proteins of breast milk
   309621 (RT1-Ba)
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3 C2-set_2 Ig_2
Other DBs
NCBI-GeneID: 309621
NCBI-ProteinID: NP_001008831
RGD: 1595867
Ensembl: ENSRNOG00000000451
Vega: OTTRNOG00000001675
UniProt: Q6MGA0 A0A023ILS4
Position
20:4577057..4581650
AA seq 255 aa
MPLSRALILGVLALTTMLSPCGGQDDIEADHVAAYGINMYQYYESRGQYTHEFDGDEEFY
VDLDKKETIWRIPEFGQLTSFDPQGGLQEIATAKYNLEILMKSNSTPATNKVPEATVFSK
SPVLLGQPNTLICFVDNIFPPAINITWLRNSKPVTEGTFETSFLSNPDHSFHKMAYLTFI
PSNDDIYDCKVEHWGLDEPVLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTIFII
QGLRSGGPSRHPGPL
NT seq 768 nt   +upstreamnt  +downstreamnt
atgccgctcagcagagctctgattttgggggtcctcgccctgaccaccatgctcagcccc
tgtggaggtcaagacgacattgaggccgaccacgtagccgcctatggtataaatatgtat
cagtattatgaatccagaggccagtacacacatgaatttgatggtgacgaggaattctat
gtggacttggataagaaggagaccatctggaggatccccgagtttggacaactgacaagc
tttgacccccaaggtggacttcaagagatagctacagcaaaatacaatttggaaatcctg
atgaagtcaaattcaaccccagctaccaacaaggttcctgaggcgaccgtgttttccaag
tcccctgtgctgctgggtcagcccaacaccctcatctgctttgtagacaacatctttcct
cctgcgatcaatatcacgtggttgagaaacagcaagccagtcacagaaggcacttttgag
accagcttcctctccaaccctgaccattccttccacaagatggcttacctcaccttcatc
ccttctaacgatgacatttatgactgcaaggtggagcactggggcctcgacgagccggtt
ctaaaacactgggaacctgagattccagcccccatgtcagagctgacagagactgtggtc
tgtgccctggggttgtctgtgggcctcgtgggcatcgtggtgggcaccatcttcatcatt
caaggcctgcggtcaggtggcccctccagacacccagggcccttgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (24)   
   KEGG PATHWAY (24)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (97)   
   RefSeq(nuc) (1)   
   GenBank (48)   
   EMBL (48)   
Protein domain (5)   
   Pfam (5)   
All databases (139)   

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