KEGG   Rattus norvegicus (rat): 309638
Entry
309638            CDS       T01003                                 
Symbol
Taf11
Name
(RefSeq) transcription initiation factor TFIID subunit 11
  KO
K03135  transcription initiation factor TFIID subunit 11
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    309638 (Taf11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    309638 (Taf11)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     309638 (Taf11)
SSDB
Motif
Pfam: TAFII28 CBFD_NFYB_HMF
Other DBs
NCBI-GeneID: 309638
NCBI-ProteinID: NP_001008351
RGD: 1305626
Ensembl: ENSRNOG00000024601
UniProt: Q5U1X0 A6JJP1
Position
20:complement(5957540..5965354)
AA seq 211 aa
MDNLGESPTDKAGEPGESEETRATPGAPVSADTEGIPEETDQVGDADSKEAAAEESELKS
QDVSDVTAAEREDPSLLTPAAKKLKLDTKDKKEKKQKVDEDEIQKMQILVSSFSEEQLNR
YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
PLQPKHMREAVRRLKSKGQIPNSKHKKITFF
NT seq 636 nt   +upstreamnt  +downstreamnt
atggacaaccttggggagtcgcccacggacaaagccggggagccaggggagtcagaggag
acgagggctactcctggggccccggtgtccgccgacactgagggaatcccggaggaaacc
gaccaggttggagacgcggactcgaaagaagccgcagcggaggaaagcgagctcaagagt
caggatgtctcagacgtaacagcagctgagagggaagacccatctttacttactcctgca
gccaaaaagctgaaattagacaccaaggacaagaaggagaagaagcagaaggtggacgaa
gacgagattcagaagatgcaaatcctggtctcgtctttctctgaggagcagctgaaccgt
tatgaaatgtatcgccggtcagctttccctaaggcggccatcaagcggctgatccagtcc
atcactggcacgtctgtgtcccagaatgttgtcattgccatgtctgggatctctaaagtt
tttgtcggggaggtggtagaggaggccctggatgtgtgtgagaaatggggagaaatgcca
cccctgcagcccaagcacatgagggaggccgtccggaggttgaagtccaaggggcaaatc
cccaactcaaagcacaagaaaatcaccttcttctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (10)   
   RefSeq(nuc) (6)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (31)   

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