KEGG   Rattus norvegicus (rat): 309758
Entry
309758            CDS       T01003                                 
Symbol
Herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
  KO
K10615  E3 ubiquitin-protein ligase HERC4 [EC:2.3.2.26]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    309758 (Herc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    309758 (Herc4)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.26  HECT-type E3 ubiquitin transferase
     309758 (Herc4)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  HECT type E3
   309758 (Herc4)
SSDB
Motif
Pfam: RCC1 HECT RCC1_2 T7-like_gp12
Other DBs
NCBI-GeneID: 309758
NCBI-ProteinID: NP_001012074
RGD: 1310971
Ensembl: ENSRNOG00000061040
UniProt: Q5PQN1
Position
20:complement(25329005..25403443)
AA seq 1057 aa
MLCWGNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQG
SEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTS
PQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLR
SQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIA
CGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFSYNGQCPQDIGSED
YFCVKRIFSGGDQSFSHYSSPQSCGPPDDFRRSDPSKQIWTVNEALIQKWLSYPSGRFPV
EIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHRLIQPDHPQISQ
QVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDCNNFTTIAIPFGTALVNLEKAP
LKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEIL
HRVNERTGQLIQYDKFYIHEVQELIDIRNDYINWVQQQAYGVDVSHGITELADIPVTICT
YPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVG
DAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSR
LIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPD
VGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAY
VDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKG
EYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLP
VSHTCFNLLDLPKYTEKETLRCKLIQAIDHNEGFSLI
NT seq 3174 nt   +upstreamnt  +downstreamnt
atgttgtgctggggaaacgcatcctatggacaactaggtttgggtggaattgatgaagaa
attgtactagagcccaggaaaagtgactttttcgtaaataaaaaggtccgagatgtagga
tgtggactcagacatactgtgttcgtcctggacgacggaactgtgtacacatgtggatgt
aatgatctaggacagctaggtcatgaaaagtccagaaagaaaccagagcaggttgttgcc
ctggatgcccaaaatatcgtagctgtttcatgtggagaagctcatacattagcacttaat
gacaagggccaggtgtatgcttggggtctcgactctgatggacagcttggcctgcaagga
tcagaggaatgtatcagagtacccagaaatattaaaagtctttcggacatccagatagta
caggttgcatgtggttactatcattcacttgcactttctaaagcaagtgaagttttctgt
tggggacagaataaatatggccagctcggtctcggcattgaatgtcaaaagcaaacctca
ccacagctgattaagtctttgcttggaataccattcatgcaagtcgcagcaggaggagcc
catagttttgtactcaccctttctggagctatctttggatggggacgtaacaaatttggt
cagctaggtcttaatgatgagaacgataggtatgttcctaatttactaaagtcactaaga
tctcagaaaatagtttatatttgttgcggagaagatcatactgctgcattaaccaaggaa
ggtggagtgtttacctttggagctggaggctatggccagctgggtcataattctaccagt
catgaaataaaccccaggaaagtgtttgagcttatgggaagcattgttactcaaattgct
tgtggaaggcagcatacttctgcatttgttccttcttcaggacgaatttactccttcggt
ctcggtggtaatgggcagttgggaactggttcaacaagcaacagaaaaagccctttcact
gtaaaaggaaactggttttcttataatggacaatgtccacaagatattggttctgaagac
tatttctgtgtcaaaagaattttctcaggtggagatcaaagcttttcacattactctagt
cctcagagctgtggacctccagatgactttagacgctctgacccttcaaagcagatctgg
acagtgaatgaagctctgattcagaaatggctcagctacccctctggaaggttccctgtg
gagatagccaatgagatagatggaacattttcttcgtctggttgcctaaatggaagtttt
ctggctgttagcaatgatgatcactatagaacaggcaccagattttcaggggtcgacatg
aatgccgctagactcttattccacagactcatacagcctgaccacccgcagatatctcag
caggtggcagctagtttggaaaagaaccttatccctaaactgactagttccttacctgat
gttgaagctttgaggttttatcttaccctgccagagtgccccctgatgagtgactgcaac
aatttcacaaccatagcaatcccctttggcacagcccttgtgaacctagaaaaagcacca
ctgaaagtacttgaaaactggtggtcagtacttgaacctccactattcctcaagatagta
gaactttttaaggaagttgtggtacatcttttgaaactctacaagatcggcattccccct
tctgaaagaagaattttcaacagttttcttcataccgcattaaaggttttagaaatatta
catagggtaaatgagagaacaggacaacttatacagtacgacaagttttacatacatgaa
gtccaagagctgatagacataaggaatgactatatcaactgggtccagcagcaagcctat
ggagtggatgtcagccatggaataactgagttggcagatatccctgtgacaatttgtaca
tatccatttgtatttgatgcccaggcaaaaactactctgctacagacagacgcagtcttg
cagatgcagatggctattgaccaggcccataggcagaatgtctcctctctttttctgcca
gtgattgagtctgtgaatccttgcttaattctggttgttcgcagagaaaatattgtagga
gatgcaatggaagtcctcaggaaaaccaagaatatagattataaaaagccactcaaagtt
atatttgttggagaagatgctgttgatgctggaggtgtacgcaaagaatttttcttgctc
atcatgagggaattattggatcctaaatatggcatgtttcgatattatgaagattccagg
cttatttggttttcagataagacatttgaagacagtgatttgttccacttaattggtgtt
atctgtggattagcaatttataattttactattgtggacctccacttccctttggcttta
tataagaagctactgaaaaggaagccatccctggatgatctgaaagagctgatgccagat
gtagggagaagcatgcaacaattgctggactacccggaggacgatatagaggaaacattt
tgtctaaactttacgatcacagttgaaaattttggtgcaacagaagtgaaagagctggtt
ctgaatggtgcagacaccgctgttaacaaacagaatcggcaggagtttgttgatgcctat
gtggattacatattcaataaatcagtggcatctttatttgatgctttccatgccggcttt
cataaggtctgtggaggaaaagttcttctgctcttccagcccaatgaattacaagctatg
gttattgggaatacaaattatgattggaaagaactggagaagaatacagaatacaaagga
gagtattgggcagaacatcccacgataaaaattttttgggaagtatttcatgaattacca
ctagaaaagaagaaacaattcctattatttttgacaggtagtgatcgaattcctattctt
ggtatgaagagtctgaaactagtcatccagtcaacaggaggtggtgagagctatctcccg
gtttcccatacctgttttaatcttctagatctcccaaaatatacagagaaagaaacccta
cgatgtaaactgatccaagctattgatcacaatgaaggcttcagtttaatataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (14)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (12)   
DNA sequence (17)   
   RefSeq(nuc) (13)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (47)   

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