KEGG   Rattus norvegicus (rat): 309871
Entry
309871            CDS       T01003                                 
Symbol
Prdm1
Name
(RefSeq) PR domain zinc finger protein 1
  KO
K24501  PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    309871 (Prdm1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    309871 (Prdm1)
SSDB
Motif
Pfam: PRDM2_PR zf-H2C2_2 zf-C2H2 SET zf-C2H2_4 zf-C2H2_6 zf-C2H2_jaz zf-C2HE zf-met STL11_N
Other DBs
NCBI-GeneID: 309871
NCBI-ProteinID: NP_001101109
RGD: 1311765
Ensembl: ENSRNOG00000000323
Vega: OTTRNOG00000000856
UniProt: D4A1S2
Position
20:complement(49542465..49564088)
AA seq 824 aa
MLDLLLEKRVGTTLAAPKCNSGSVKFQGLAETSGIMKMDMEDADMTLWTEAEFEEKCTYI
VNDHPWDSSADGGTSVQAEASLPRNLLFKYAANNSKEVIGVVSKEYIPKGTRFGPLIGEV
YTNDTVPKNANRKYFWRIYSREEFHHFIDGFNEEKSNWMRYVNPAHSAREQNLAACQNGM
NIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTVMNLTQTESNPKQYSSEKNELYP
KSVPKREYSVKEILKLDSNPSKRKDSYRSNISPYTSEKDMDGFRKNGSPDMPFYPRVVYP
IRAPLPEDFLKASLAYGMERPTYITHSPLPSSTTPSPPASSSPEQSLKSASPHGSPGNTV
SPVVPGPPEHRDSYSYLNVSYGSEGLGSYPGYAPAPHLPPAFIPSYNAHYPKFLLPPYGI
SSNGLSTMNNINGINNFSLFPRLYPVYSNLLSGGNLPHPMLNPASLPSSLPTDGARRLLP
PEHPREVLVPAPHSAFSLTGAAASMKDESSPPSGSPTAGTAATSEHVVQPKATSSVMAAP
STDGAMNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTFGQLSNLKVHLRVHSGER
PFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQC
KVCPAKFTQFVHLKLHKRLHTRDRPHKCAQCHKSYIHLCSLKVHLKGNCPVVPAPGLPLE
DLTRINEEIERFDLSDNADRLEDMEDSVDVTSMVEKEILAIVRKEKEETGLKMSLQKTMG
SRLPSSGCSLYESSDLSLMKLPHSNSLPLVPVKVKQETVEPMDP
NT seq 2475 nt   +upstreamnt  +downstreamnt
atgttggatcttctcttggaaaagcgtgtgggtacgaccttggctgcccccaagtgtaac
tccggttccgtgaagtttcaaggattggcagagacgtctgggatcatgaaaatggacatg
gaggacgcggatatgactctgtggacagaggccgagtttgaagagaagtgtacgtacata
gtgaacgaccacccctgggattccagcgccgacgggggtacttctgttcaagccgaggca
tccttaccaaggaacctgctcttcaagtatgccgccaacaacagcaaagaggttattggt
gtggtgagtaaggaatacatcccaaagggaacgaggttcggacccctgatcggcgaagtc
tacaccaacgacacggttcccaagaatgccaacaggaaatatttttggcggatctattcc
agagaggagttccaccacttcatcgacggctttaacgaggagaaaagcaactggatgcga
tacgtgaatccagctcactctgcccgggagcagaacctggccgcctgccagaacggaatg
aacatctatttctacactattaagcctatccctgccaaccaggaacttcttgtgtggtat
tgccgggactttgcggagaggctccactacccttatcctggagagctcacagtgatgaat
ctcacacaaacagaaagcaacccaaagcaatacagcagtgagaaaaatgaactctaccca
aagagtgtccccaagagagagtacagcgtgaaagaaatcctcaaactggactccaatccc
tccaaaaggaaggacagctaccgttccaacatttcaccctacacttcagaaaaagacatg
gatggctttcggaaaaatgggagcccggacatgcccttctaccctcgggttgtgtatccc
atccgggcacctctgccagaagactttttgaaggcgtccctggcctatgggatggagaga
cccacctacatcactcacagcccccttccgtcttccacaactccaagtccccctgcaagc
agtagcccagagcagagcctcaagagcgccagcccccacggcagcccggggaacacggtg
tcacccgtggtgccaggccccccagagcaccgggactcctactcctacttgaatgtttcc
tatggttctgagggcctgggctcctaccctggctatgcccctgccccgcatctcccgccg
gctttcatcccctcctacaatgctcactaccccaagttcctgttgccaccctacggcatc
agctccaatggcttgagcactatgaacaatatcaatggtatcaacaacttcagcctattc
cccaggttgtatcctgtctacagtaacctcctcagtgggggcaacctgcctcaccccatg
ctcaacccagcttccctaccgagttccctgcctaccgatggagcccggaggctgctccca
ccggagcaccccagagaggtgcttgtcccggcgccccacagtgccttctcccttactggg
gctgcagccagcatgaaggacgagagtagcccccccagcgggtctccaacggcgggaact
gcggccacgtcggaacacgtggtacaacccaaagctacctcatcggtgatggcagccccc
agcactgacggagccatgaatctcattaagaacaaaagaaacatgactggttacaagacc
cttccttacccgctgaagaagcagaacggcaagatcaagtatgagtgcaatgtctgtgcc
aagacgtttggtcagctctcaaacctgaaggtccacctgagagtgcacagtggagaacgg
cctttcaaatgccagacctgcaacaagggctttactcagctcgcccacctgcagaaacac
tacctggtacacacgggagaaaagccacatgaatgccaggtctgccacaagagatttagt
agcacaagcaatctcaagacacaccttcgactgcattctggagaaaaaccttaccagtgt
aaggtgtgccctgccaagtttacacagttcgtgcacctgaagctgcacaagcgactgcac
acccgggatcggcctcacaagtgtgcccagtgccataagagctacatccatctctgtagc
ctcaaggtccacctgaagggcaactgccctgtggtcccagcccccgggctgcccttggag
gacctgacccggatcaatgaagaaatcgagaggttcgaccttagcgacaacgctgaccgt
cttgaggacatggaggacagcgtcgatgtgacctccatggtggagaaggagattctagcc
atagtcaggaaagagaaagaagaaactggtctgaaaatgtctttgcaaaaaaccatgggg
agcagactcccctcctcagggtgcagcctctacgagtcatcagacctgtccctcatgaag
ttgcctcacagcaactcactacctctggtgcctgtaaaggtcaaacaagaaacagttgaa
ccgatggatccttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (10)   
   Pfam (10)   
All databases (48)   

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