KEGG   Rattus norvegicus (rat): 309888
Entry
309888            CDS       T01003                                 
Symbol
Sim1
Name
(RefSeq) single-minded homolog 1
  KO
K09100  single-minded
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    309888 (Sim1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    309888 (Sim1)
SSDB
Motif
Pfam: SIM_C PAS_3 PAS_11 PAS HLH PAS_9 PAS_4 Per3-like_PAS-A
Other DBs
NCBI-GeneID: 309888
NCBI-ProteinID: NP_001101111
RGD: 1309949
Ensembl: ENSRNOG00000037600
UniProt: A6K6T3 D3ZMU8
Position
20:55409814..55489450
AA seq 765 aa
MKEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPEGL
GEAWGHTSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELT
GNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFLRMKCVLAKRNAGLTCGGY
KVIHCSGYLKIRQYSLDMSPFDGCYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDM
KLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAK
HGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLSLDQISPSKPTFSYTSSS
TPTITDNRKGAKSRLSSSKSKSRTSPYPQYSGFHTERSESDHDSQWGGSPLTDTASPQLL
DPERPGSQHELSCAYRQFPDRGSLCYGFALDHSRLVEDRHFHTQACEGGRCEAGRYFLGA
PPAGRDPWWGSRAALPLTKASPESRETYENSMPHITSVHRLHGRGHWDEDSVVSSPDPGS
ASESGDRYRSEQYQNSPHEPSKIETLIRATQQMIKEEENRLQLRKAPPDQLASINGAGKK
HSLCFANYQQPPPAGEVCHSSALTSTSPCDHIQQREGKMLSPHENDYDNSPTALSRISSP
SSDRITKSSLILAKDYLHSDMSPHQTAGDHPAISPNCFGSHRQYFDKHAYTLTGYALEHL
YDSETIRNYSLGCNGSHFDVTSHLRMQPDPAQGHKGTSVIITNGS
NT seq 2298 nt   +upstreamnt  +downstreamnt
atgaaagagaagtctaaaaatgctgcccggacgaggagggagaaagaaaacagtgaattt
tacgaactggctaaattactgccgttaccctcagccatcacctcgcaactggacaaagcc
tcgatcatcagactcacgaccagctatctcaaaatgagagtggtctttccggaagggctt
ggcgaggcgtggggtcacaccagtcgaaccagccctctggataacgttggtcgcgaactc
ggctctcatctactccagactctggatggcttcatctttgtggtggccccagatgggaag
atcatgtacatctcagagacagcttcagttcacctgggcctttctcaggtagaactgact
gggaacagcatctatgaatatatccacccggctgatcatgatgagatgacagcagtgctc
acagcccatcaaccctaccactctcactttgtacaggagtacgagatcgaacgctccttc
tttctaaggatgaagtgtgttttggccaagcggaatgctggcctcacctgcggtggctac
aaggtcattcactgtagcggctacctgaagatccgccagtacagcctggatatgtctccc
tttgatgggtgctaccaaaatgtgggtttggtggctgtgggtcactccctgcctccgagc
gctgtgacagagatcaaactacacagcaacatgttcatgttccgagccagtctggacatg
aaactcattttcctggactccagggtagcagagctgactgggtatgaacctcaggacttg
attgagaagaccctgtaccatcacgtgcacggctgtgacaccttccacctacgctgtgca
caccatttactgttggtgaagggtcaggtgaccaccaagtactacaggttcttggcaaaa
cacggcggctgggtctgggtgcagagttacgccaccatcgtacacaacagccgctcctcc
aggccgcactgcatcgtcagcgttaactacgtcctcacagacacagaatacaaagggctg
cagctctctctggaccagatatcaccctctaagcccactttctcctataccagcagttcc
acacccaccatcactgacaacaggaagggggccaagtcaaggctctctagtagcaagtca
aaatccaggacctccccatatccccagtattcgggattccacactgaaagatcagaatct
gaccatgacagccagtggggtggaagtcccctgactgatactgcctccccacagctcctg
gacccagagaggcctggctctcagcacgagttgtcctgtgcgtacagacagtttccagat
cgcggttctctctgctatggctttgcgctggaccattccaggctggtggaggacaggcac
ttccacacccaagcctgcgagggagggcggtgtgaggctggcaggtactttctcggagca
ccacctgctgggagagatccctggtggggttctcgagcagctctgccgctcaccaaggcc
tccccggagagcagagaaacctatgagaacagcatgccgcacatcacctctgtccacaga
ctccacggtcgaggtcactgggatgaagatagtgtggtcagctctccagaccctgggtca
gccagtgaatccggtgaccgataccgctccgaacagtatcaaaatagcccacatgaacct
agcaaaattgaaactctcataagagccacccagcagatgattaaagaggaagagaacaga
ttacagctaaggaaagcccctcccgaccaactggcttccattaacggggctgggaagaaa
cactccctctgttttgcaaactatcaacagcccccaccggcaggtgaagtctgccacagc
tctgctcttaccagcacttcaccatgtgaccacatccagcagagagagggaaagatgctt
agccctcacgaaaacgactatgacaacagtcccactgcactgtctcggataagtagtccc
agttctgatcgcataacaaagtccagtttaatcctggctaaagactatctacattcagat
atgtctcctcatcagacagcaggagaccatcctgccatctctccaaactgttttggctcc
caccggcagtattttgataagcatgcctatacgttaactggttatgccctggaacattta
tatgacagtgagactattaggaactattccttgggctgcaatggctcacactttgatgta
acctcccatctaaggatgcagccggacccagcgcaaggacacaagggaacatctgttata
ataaccaatggaagttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

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