KEGG   Rattus norvegicus (rat): 310071
Entry
310071            CDS       T01003                                 
Symbol
Ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03420  Nucleotide excision repair
rno04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    310071 (Ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    310071 (Ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    310071 (Ercc8)
   03400 DNA repair and recombination proteins [BR:rno03400]
    310071 (Ercc8)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     310071 (Ercc8)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      310071 (Ercc8)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 Nup160
Other DBs
NCBI-GeneID: 310071
NCBI-ProteinID: NP_001101120
RGD: 1311570
Ensembl: ENSRNOG00000009968
UniProt: A6I5J9
Position
2:41380901..41418294
AA seq 397 aa
MLSFLSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERVHCSGVNTLDIEPVEGRYML
SGGSDGVIVLYDLENASRQPYYTCKAVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF
DKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLLTLDQHNGKKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSSGDNTLVNYGKVCNSSRKGLKFTVS
HGCNSEFVFVPYDSTIAMYAVYSGERLAMLKGHYKSVDCCVFQPNFQELYSGSRDCNILA
WVPASYEPVPDDDDEAPTKSRLNPAFTDAWSSSDEDG
NT seq 1194 nt   +upstreamnt  +downstreamnt
atgttgagctttttgtccgctcgacagtcagggttggaggaccctcttcgcttgcgtaga
gcgcagtctacacggagggtcctgggcctggagttaaacaaagacagggatgttgaaaga
gtccactgcagcggagtcaacactctggacattgaacctgtcgaaggacgatacatgttg
tcaggtggttccgatggtgtgattgtactctatgaccttgagaacgccagcagacagccc
tattacacatgtaaagcagtgtgttccgttggcagaagccatcctgatgtccacaaatac
agcgtggagacggttcagtggtatcctcatgacactggcatgttcacatccagctcattt
gataaaactctgaaagtatgggatacaaacacattgcaggctgcagatgtgtttaatttt
gaggaaacagtttacagtcatcacatgtccccagcagccaccaagcactgtctggtagca
gttggaactagaggacccaaggtacaactttgtgacttaaagtctggatcctgttctcac
attctacagggtcacagacaggaaatattggcagtttcctggtcaccacgctatgactat
atcttggcaacagcaagcgctgacagtagagtaaaattatgggatgtgagaagagcatca
ggatgtttgcttactcttgaccagcataacgggaaaaagtcacaagctgttgaatcagca
aacactgctcacaatgggaaagttaacggcttatgttttacaagtgacgggcttcacctg
ctcacggttggcacagacaaccgaatgaggctctggaatagctccagcggggacaacaca
ctggtaaactacgggaaagtgtgtaacagcagcaggaaagggctgaagttcactgtctcc
catggctgcaactcagagtttgtgtttgttccctacgacagcaccattgccatgtatgca
gtctactcaggagagcggctcgccatgcttaagggacattacaaaagtgtcgactgctgt
gtgtttcagcctaatttccaggaactttacagtggtagcagggactgcaatattctcgct
tgggtgccagcttcatatgaaccagttcctgatgatgacgatgaagctccaaccaaatcg
aggttgaacccagcattcacggatgcctggagcagcagtgacgaggacgggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (17)   
   RefSeq(nuc) (13)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

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