KEGG   Rattus norvegicus (rat): 310207
Entry
310207            CDS       T01003                                 
Symbol
Sema5a
Name
(RefSeq) semaphorin-5A precursor
  KO
K06841  semaphorin 5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    310207 (Sema5a)
SSDB
Motif
Pfam: TSP_1 Sema TSP1_spondin PSI TSP1_ADAMTS TSP1_CCN
Other DBs
NCBI-GeneID: 310207
NCBI-ProteinID: NP_001101129
RGD: 1308650
Ensembl: ENSRNOG00000011977
UniProt: D3ZTD8
Position
2:85020724..85451938
AA seq 1074 aa
MKGACILAWLFSSLGVWRLARPETQDPAKCQRAEHPVVSYKEIGPWLREFRAENAVDFSR
LTFDPGQKELVVGARNYLFRLQLEDLSLIQAVQWECDEATKKACYSKGKSKEECQNYIRV
LLVGGDRLFTCGTNAFTPVCTIRSLSNLTEIHDQISGMARCPYSPQHNSTALLTASGELY
AATAMDFPGRDPAIYRSLGTLPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH
DCGKTVFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSTFFLPEL
DLIYGIFTTNVNSIAASAVCVFNLSAISQAFNGPFKYQENSRSAWLPYPNPNPNFQCGTM
DQGLYVNLTERNLQDAQKFILMHEVVQPVTTVPSFMEDNSRFSHVAVDVVQGRDTLVHII
YLATDYGTIKKVRAPLSQSSGSCLLEEIELFPERKSEPIRSLKILHSQSVLFVGLQEHVV
KIPLKRCHFHQTRGACIGAQDPYCGWDAVMKKCTSLEESLSMTQWDQSVPTCPTRNLTVD
GSFGPWSPWTPCTHTDGTAVGSCLCRSRSCDSPAPQCGGWQCEGPRMEITNCSRNGGWTP
WTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHVFWTGWG
PWERCTAQCGGGIQARRRTCENGPDCAGCNVEYQPCNTNACPELKKTTPWTPWTPVNISD
NGGHYEQRFRYTCKARLPDPNLLEVGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSA
HTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEFQECNILPCPV
DGVWSCWSSWSKCSATCGGGHYMRTRSCTNPAPAYGGDICLGLHTEEALCNTQTCPENWS
EWSEWSVCDASGTQVRTRQCILLFPVGSQCSGNTTESRPCVFDSNFIPEVSVARSSSVEE
KRCGEFNMFHMMAVGLSSSILGCLLTLLVYTYCQRYQQQSHDATVIHPVSPAALNSSITN
HINKLDKYDSVEAIKAFNKNNLILEERNKYFNPHLTGKTYSNAYFTDLNNYDEY
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgaagggagcctgcatccttgcatggctgttctcaagcctgggagtgtggagacttgct
cggcctgagacccaggaccctgccaagtgccagagagctgagcaccccgtcgtctcctac
aaagaaattggcccctggttacgggaattcagagccgagaatgctgtggatttctcgagg
ttaacatttgacccaggacagaaagaacttgtcgtaggagcaagaaactatctcttcaga
ctacagctcgaggatctgtctctcatccaggctgtgcagtgggagtgtgatgaagccacg
aagaaggcctgttacagcaagggcaaatcgaaggaggaatgtcagaactacatacgagtg
ctcttagtgggcggggaccggctcttcacctgtgggaccaatgccttcacacccgtctgt
accatccgctccttaagtaacctgactgagatccatgatcagatcagtggcatggctcga
tgtccctatagtccccagcacaattctacagctctactcactgccagtggcgagctctat
gctgcaacagccatggatttcccagggcgcgatccagccatttatcgaagtctgggcact
ttacctcctcttcgaactgcacagtacaactccaaatggctcaatgaaccaaactttgtg
tcttcctacgacatcgggaacttcacctacttcttcttccgagaaaatgccgtggaacac
gactgtgggaagactgtgttctccagggcagccagggtctgcaagaatgacattggagga
cgatttcttctggaggatacctggactaccttcatgaaggctcgcctcaactgctctcgg
cctggtgaggtgccgttctactacaacgagcttcaaagcaccttcttcctgccggagctg
gatctgatctacggcatcttcaccaccaatgtaaacagcattgctgcctctgctgtctgt
gtcttcaacctgagcgccatctcacaggccttcaatggacccttcaagtaccaagagaac
tctcgctcagcctggctgccttatcccaaccccaaccccaattttcagtgcggcaccatg
gaccagggcctgtatgtaaacctgacggaaagaaacctacaggatgctcagaagttcatc
ctgatgcatgaagtggtgcagccagtgaccacagtgccttccttcatggaagacaacagc
cgtttctcccatgtggctgtcgatgttgtgcaaggcagggacacccttgtccatatcatc
tatctggccacagattatggcaccattaaaaaagtgcgggctccgctgagtcagagctcg
ggcagctgtttgctagaagagattgagctttttccagagaggaagagtgagcccatcagg
agcctaaagatcctccacagccagagtgtcctatttgtggggctacaggagcatgtggtc
aagatccccctgaagagatgccattttcatcaaacacgtggtgcctgcattggtgctcag
gacccttactgtggctgggatgcggtgatgaagaagtgcaccagcctggaggagagcctg
agcatgacccagtgggatcagagcgtccccacctgtccgaccagaaatctcaccgtagat
gggagctttggcccgtggtctccatggacaccctgtactcacactgatggcactgctgtg
ggatcctgcctctgccggtcccgatcctgtgacagcccagctccacagtgtggcggctgg
cagtgtgagggccctagaatggagatcaccaactgttccaggaatggaggctggactccc
tggacctcctggtctccctgcagcaccacttgtggcattggcttccaggtgcggcagcgc
tcctgcagcaaccctacgcccaggcatggagggcgtgtgtgcgtgggccagaacagggag
gaaagatactgcaatgaacatttactctgcccaccacacgtgttctggacaggctgggga
ccttgggaacgctgcacagcccagtgcgggggtggcattcaagctcgccgtaggacctgt
gaaaatgggcctgactgtgcaggatgcaatgtggaataccagccttgtaacaccaatgca
tgcccagagttgaagaagaccacaccatggaccccctggacacctgtcaacatctctgac
aatgggggccactatgagcagcggttccgctacacctgtaaagctcgcctgccagatcca
aacttattggaagtaggaagacaaaggatagaaatgcggtactgttctagtgatgggacc
agtggctgctccacagatggactttctggagactttctaagagctgggagatactctgcc
catacagtcaatggggcatggtcagcctggacttcctggtcacagtgcagcagagactgc
agcaggggcattcgaaacaggaagcgtgtttgcaacaacccagagcccaagtatggaggt
atgccatgccttggtccatcactggagttccaggaatgcaacattttaccctgtccagtg
gatggtgtgtggtcttgctggtcatcctggtctaaatgctcagcaacttgtgggggtgga
cactacatgagaacccgttcgtgtacgaatccagccccagcatacggaggggacatctgc
ctgggactgcacacggaagaggccctctgtaacacacagacctgcccagagaactggtca
gagtggtcagagtggtctgtgtgtgatgcatctggtacccaggtccgtactcggcagtgc
atccttctgtttcctgtgggcagccagtgttctggaaatactacagagagccggccttgt
gtatttgactctaatttcatcccagaagtgtctgtggcaagatccagcagcgtagaagag
aaaaggtgtggagagttcaacatgttccacatgatggctgtgggacttagcagttccatc
ctcggctgcctccttacactgcttgtctacacctactgccagcggtaccagcagcagtcc
catgatgcaactgtcatccatcctgtttctcccgccgccctcaacagcagcataactaac
cacatcaacaaactggataaatacgattccgtggaggccatcaaggcatttaacaaaaac
aacttgatcctagaggagagaaacaaatacttcaacccacatctcactgggaagacctac
tccaacgcctactttacagatctcaacaattatgatgaatactag

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (23)   

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