KEGG   Rattus norvegicus (rat): 310306
Entry
310306            CDS       T01003                                 
Symbol
Usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13
  KO
K11836  ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    310306 (Usp13)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    310306 (Usp13)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    310306 (Usp13)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     310306 (Usp13)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   310306 (Usp13)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    310306 (Usp13)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   310306 (Usp13)
SSDB
Motif
Pfam: UCH zf-UBP_var UBA zf-UBP UCH_1 UBA_4
Other DBs
NCBI-GeneID: 310306
NCBI-ProteinID: NP_001101135
RGD: 1306044
Ensembl: ENSRNOG00000030639
Vega: OTTRNOG00000001135
UniProt: D3ZDI9 A6IHR3
Position
2:117502811..117617049
AA seq 858 aa
MQRRGALFSVPGGGGKMAAGDLGELLVPHMPTIRVPRSGDRVYKNECAFSYDSPNSEGGL
YVCMNTFLAFGREHVERHFRKTGQSVYMHLKRHMREKVRGASGGALPKRRNSKLFLDLDM
DDDLNSDDYEYEDEAKLVIFPDHYEIALPNIEELPALVTIACDAVLSSKSPYRKQDPDTW
ENELPVSKYANNLVQLDNGVRIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGN
GHALEHYRDMGYPLAVKLGTITPDGADVYSFQEEGPVSDPHLAKHLAHFGIDMLHTQGTE
NGFRDNDIKLRVSEWEVIQESGTKLKPMYGPGYTGLKNLGNSCYLSSVMQAIFSIPEFQR
AYVGNLPRIFDYSPLDPTQDFNTQMTKLGHGLLSGQYSKPPVKSELIEQVMKEEHKPQQN
GISPRMFKAFVSKSHPEFSSNRQQDAQEFFLHLVNLVERNRIGSENPSDVFRFLVEERIQ
CCQTRKVRYTERVDYLMQLPVAMEAATNKDELIAYELMRREAETNRRPLPELVRAKIPFS
ACLQAFAEPDNVDDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVS
IDMPDLLDISHLRARGLQPGEEELPDISPPIVIPDDSKDRLMNQLIDPSDIDESSVMQLA
EMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIPGYGGAGASAFGATGLD
NQPPEEIVAIITAMGFQRSQAVQALQATNHNLERALDWIFSHPEFEEDSDFVIEMENNAN
ANIMSEAKPEGPRVKDGSGMYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYNDHKVCAS
ERPPKDLGYMYFYRRIPS
NT seq 2577 nt   +upstreamnt  +downstreamnt
atgcagcgccggggcgccctgttcagcgtgccgggtggcggcgggaagatggctgcaggg
gacctgggtgagctgctggtgcctcacatgcccacgatccgcgtgcctaggtcaggggac
cgcgtctacaaaaacgagtgcgccttctcctacgactctccgaactctgaaggtggactc
tatgtatgcatgaatacatttttggcttttggaagggaacacgttgaaagacattttcgg
aaaactggacagagcgtgtacatgcacctgaagaggcacatgcgagagaaggtaagagga
gcttctggtggagctttacccaaaaggaggaattctaaactatttttagatctagatatg
gatgacgatttaaatagtgacgattacgaatatgaagacgaagccaaacttgttatattc
ccagaccactatgaaatagcccttcctaacattgaggagttaccagccctggtaacaatt
gcttgcgatgcagtgctcagctcaaagtccccgtataggaagcaggatccagacacgtgg
gaaaacgaactgccagtatcgaagtacgccaacaacctcgtgcaactggacaacggggtc
aggattcctccgagtggctggaagtgtgcccgatgtgacctgcgggagaacctctggttg
aatctgactgacggctctgttctgtgtgggaagtggttttttgacagctcggggggcaat
ggccatgcgctggagcattacagagacatgggctatcctctggccgtgaagctgggcacc
atcacgcctgatggagcagatgtttattcttttcaagaagaggggcctgtttcggatcct
catttggccaaacacttagcacattttgggattgacatgctccacacacaagggacagag
aatgggttccgggacaatgacatcaagctgagagtcagcgagtgggaagtgatccaggag
tcaggaactaagctgaagccaatgtatggcccagggtacacgggcctgaagaacctgggc
aacagttgctacctcagttctgtcatgcaggccatcttcagcatcccagagttccagaga
gcgtatgtaggaaacctcccaaggatatttgactactcaccattagatccaacgcaggac
ttcaacacacagatgactaagttgggacatggcctcctctctggccagtactcgaagcct
ccagtgaaatctgagctcattgaacaggtgatgaaggaggagcacaagcctcagcagaat
gggatctctccacgaatgttcaaggcctttgtcagcaagagtcacccagaattttcctcc
aatagacagcaggatgcccaggagtttttcttgcatttggttaatctggtagagaggaat
cgcattggctcagaaaacccaagtgatgttttccggtttttggtggaagagcgaattcaa
tgctgtcagaccagaaaggtccgctacacagagagggtggactaccttatgcagttacca
gtggcaatggaggcagcaaccaacaaagatgagctgattgcctatgaactaatgcggagg
gaagcagaaaccaacaggagaccccttccagagctggtacgagccaagatcccattcagt
gcctgtcttcaggcctttgctgaaccagacaatgtggatgatttctggagcagtgctctg
caggccaagtctgcaggggtcaaaacatctcgctttgcctcattccctgaatacttggta
gtgcagataaagaagttcacttttggtcttgactgggttccccgaaaatttgatgtttct
attgatatgccagatctactagatatcagccatctcagagccaggggcttgcagccaggg
gaagaggagcttcctgacatcagcccccccatagtcattcctgatgactcaaaagaccgc
ttgatgaaccagctgatagacccctcagacattgatgagtcctcggtgatgcaactggct
gagatgggcttccctttggaggcctgcaggaaggctgtgtacttcacggggaatactgga
gctgaggtggccttcaactggattatcgtgcacatggaagagcctgattttgctgaacca
ctggccatacctgggtatggaggggctggggcctctgcctttggtgctactggactggac
aaccaacctcctgaggaaatcgtagctattatcactgccatgggattccagcgcagtcag
gcggtacaggctctacaagccacgaaccataacctggaaagagcactggactggatcttc
agccaccctgagtttgaagaggacagtgactttgtcatcgagatggagaacaatgcgaat
gcaaacatcatgtctgaggccaagccagaggggcccagagtcaaggatgggtctggaatg
tatgagttgtttgcgttcatcagtcacatgggaacatctacgatgagtggccattatgtt
tgccatatcaagaaggagggacgatgggtgatctacaatgaccacaaagtttgtgcctca
gaaaggccccccaaagacctgggatatatgtacttttaccgcaggataccaagctaa

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Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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