KEGG   Rattus norvegicus (rat): 311166
Entry
311166            CDS       T01003                                 
Symbol
Clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    311166 (Clp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    311166 (Clp1)
Enzymes [BR:rno01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     311166 (Clp1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     311166 (Clp1)
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 ATP_bind_1 AAA_18 MMR_HSR1 TniB AAA_16 AAA_22 nSTAND3 CbiA AAA_10
Other DBs
NCBI-GeneID: 311166
NCBI-ProteinID: NP_001009599
RGD: 1307679
Ensembl: ENSRNOG00000007416
UniProt: Q5PQL4
Position
3:complement(90213461..90217165)
AA seq 425 aa
MSEESNDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGYGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq 1278 nt   +upstreamnt  +downstreamnt
atgagtgaggaatccaatgatgacaagaagccaacgaccaagtttgaactagagcgagaa
acagagcttcgatttgaggtggaggcatctcagtcagttcagttggagttgctggctggc
atggcagagatctttggcacagaactgaccagaaacaagaaattcacctttgatgctggt
gccaaggtggctgttttcacttggcatggctgttctctgcagttgagtggccggaccgag
gtggcttatgtctctaaggacacccctatgttgctttaccttaacactcatacagccttg
gagcagatgcggaggcaggcagaaaaggaagaagagagaggcccccgagtgatggttgtg
ggtcctactgatgtgggcaagtccacggtgtgccggctgctactcaactacgcagtgcgt
ttgggccgacgtcctacttacgtggagttggatgtagggcagggctctgtgtccattcct
ggtaccatgggggccctgtacattgagcgacccgcagatgtggaagaaggtttctccatc
caggcacctcttgtgtatcattttggctccaccactcctggcaccaacatcaagctttac
aacaagattacatctcgtttagcagatgtgttcaaccaaaggtgtgaagtgaatagaaga
gcttctgtgagtggctgtgtcatcaacacctgtggctgggtcaagggttatggttaccag
gccctggtgcacgcagcttcagcctttgaggtggatgtggttgtggttctggatcaagaa
cgactgtacaacgagttgaaaagggacctgcctcattttgttcgaactgtgctgctccca
aaatcagggggtgtggtagaacgctccaaggacttccggcgggaatgtagggatgaacgt
atccgtgaatatttctatggattccgaggctgtttctatccccatgccttcaatgtcaaa
ttttctgatgtgaaaatctacaaagttggggcacccaccatcccagactcgtgtttacct
ctgggcatgtctcaggaagacaatcagctcaagttagtacctgtcacccctggtagagat
atggtgcaccatctcctgagtgtcagcactgctgagggcacagaagagaacctttctgag
acaagtgtggctggattcattgttgtgaccagtgtggacgtggaacaccaggtgtttact
gtcttgtctccagccccccgcccactgcctaagaactttcttctcatcatggatatccgg
ttcatggatctcaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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