KEGG   Rattus norvegicus (rat): 311338
Entry
311338            CDS       T01003                                 
Symbol
Rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1
  KO
K20826  RNA polymerase II-associated protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    311338 (Rpap1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     311338 (Rpap1)
SSDB
Motif
Pfam: RPAP1_C RPAP1_N
Other DBs
NCBI-GeneID: 311338
NCBI-ProteinID: NP_001029171
RGD: 1590891
Ensembl: ENSRNOG00000005483
UniProt: Q3T1I9
Position
3:complement(127200450..127221985)
AA seq 1400 aa
MMLSRPKPGESEVDLLRFQSQFLEAGAAPAVQLVKGSRRRGDAHPDQLPPQDHRDVVMLD
SLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHITAVLSKIVERDTSSVTVT
LPVPSGVAFPPVFHRSQERQVKPAASSKRSIFAQEIAARRVSDNRAPSAEQVVPSPDAPE
GAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRSQAAVQEVQTIHEENVARLQAMDP
EEILKEQQQLLAQLDPSLVAFLRAHNHTREQTETKATKEQNPERPSVPVSKEEPIMSTCT
GESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQ
ERMQARFSLQGELLEPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALH
VLSHIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRIDSVIAAAVRALRALLVA
PGDEELLDSTFSWYHGASVFPMMPSHDDKEDEDEDEELTKEKVNRKTPEEGSRPPPDLAR
HDVIKGLLATNLLPRFRYVLEVTCPGPSVVLDILAVLIRLARHSLESAMRVLECPRLMET
IVREFLPTSWSPIGVGPAPSLYKVPCAAAMKLLRVLASAGRNIAARLLSSFDVRSRLCRF
IAEAPRDLALPFEEAEILTTEAFRLWAVAASYGQGGDLYRELYPVLMRALQTLPPELSTH
PLQPLSMQRMASLLTLLTQLTLAASTQPEATSGSVESCVVAIPSSITWTHVSGLKPLVEP
CLKQTLKFLRRPDVWNALGPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFLDEFLL
PLLSQPPLGRMWDSLRDCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPF
LTALLSLINTLGQIHKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHEYH
LQYLVLSLAQKAATSQPEPAASTALHHVMALVLLSRLLPGSEFLAHELLLSCVFRLGFLP
ENASGGPEAADFSDGLSLGNSGDPHCRRGALLVQACQDLPSIRSCYLAHCSPARASLLTS
QALYRGELPRVSSLLLPVPKEPLLPTDWPFQPLIHLYHRASDTPSGLPAADTVGITMRVL
QWVLVLESWRPEALWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLP
NLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHV
GVLRALGLPLAQLPVPLECYTEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVN
SFVFCQDPKSSDEVKAARRSMLQKVWLLADKDLRQHLLHYKLPNSSLPEGFELYPQLPRL
RQQYLQTLPTEVLQNGGFKT
NT seq 4203 nt   +upstreamnt  +downstreamnt
atgatgttgtccagaccgaagcctggagagtctgaggtggacctactgcgcttccaaagt
cagttcctcgaggctggtgcagctccagcggtgcagctggtgaaagggagtaggaggcgt
ggtgatgcgcatccagaccagctccccccacaggaccatcgggatgtggtgatgctggac
agtctcccagatttgcccccggctctgcttcctgctccttccaagagagctagaccaagc
cctggccgccccctgcctcacgatgaagaccctgaggagaggctgaacagacacgatgag
cacatcactgctgttttgtctaagattgttgaacgggatacaagttcagttactgtgact
ctgcctgtgcccagtggtgtggctttcccccctgtgttccaccgctctcaggagagacag
gtgaaaccagcagcatctagtaaaaggagcatctttgcccaagagattgcagcaaggagg
gtgtcagacaacagggcaccatcagctgagcaagttgtccccagcccagatgcaccagag
ggtgccgtgccctgtgaaacaccctcctctaaggacagaggcagccagcttcctgggagg
agccatagcttccacagaccaaatctaatcacaggaaaggggctcaggagccaggcggct
gtgcaggaggtccagaccatccatgaagagaatgtagcaagactacaagccatggatcct
gaggagatcctgaaggagcagcagcagttactggctcaacttgaccccagcttggttgcc
ttcttgagagctcataaccatacccgggagcaaacagaaacaaaagccaccaaggagcag
aacccagaaaggccctcagttcctgtcagtaaagaagagcccatcatgtcaacatgtacc
ggggagtctgggaccagggacaagctggaggacaagttggaggacaagctgcagccaaga
accccagcactgaagctccccatgacccccaacaaagaatggctccatatggacaccgta
gagctggagaagctccactggacccaggacctgccaccgctccggcggcagcagacacag
gagagaatgcaggctcgattcagccttcagggagagctcctggagcctgatgtggatctg
cccacacatctgggcctgcaccaccacggagaagaggcagagagagcagggtactctcta
caggagctgttccacctgacccgtagccaggtatcccagcagagagcactggcattgcat
gtgttgtcccacatcgtcggcagggcccaggctggtgagtttggggaccgtctagtgggc
agtgtcttgcgcctcctcttggatgctggcttcctcttcctgctgcgcttctctctggat
gacaggatagacagcgtcattgcagcagctgtccgagctcttcgtgctctgctggttgct
cctggagatgaggagctccttgacagcaccttctcttggtatcatggagcttcagtgttc
cctatgatgcccagccacgacgataaagaggatgaagatgaggacgaagaactcacaaaa
gaaaaggtgaatcgaaagacccctgaggaaggaagccgccctccacccgacctggccaga
catgatgtcatcaagggtcttctggctaccaacctgctgcctcggttccgctatgtgctg
gaggtgacctgcccagggccctctgtggtccttgacatcctggctgtgcttatacgcctg
gcccggcattccctggagtcagccatgagggtcctggagtgtcctcggctgatggagacc
atagttcgggagttcttgccgaccagttggtcccctataggggtggggcctgctcccagt
ctatataaagtgccttgtgctgctgccatgaaactactcagggtcctggcctcagctggg
aggaatatcgctgcccgactgctaagcagctttgatgtcaggagccgactgtgccgattc
atagctgaagcaccacgtgacctggccttgccattcgaagaagcagagatcctgacaact
gaggccttccgtctctgggccgtggctgcctcctatggccagggtggtgacctttacagg
gagctgtacccagtgctcatgcgggccctgcagacactgcctccagagctcagcactcat
cccctgcagcccctgtccatgcagcggatggcctctctgctcactctgctcacccagctg
accctggcagctagcacacagcctgaggccaccagtggctctgtcgagtcctgtgtggtg
gccatcccttcctcaatcacctggacacatgtatctggactcaagccactggttgagcca
tgtctaaagcagaccctaaagtttctgcgcagacctgatgtgtggaatgccctgggtccg
gtgcctagtgcctgccttctgttcttgggtgcttactatcagacctggagccagcagtca
ggcttgtgcccagaggattggcttcaggacatggaacgctttttggatgaattcttgctg
ccactgctgagccagcctcctttgggcaggatgtgggattccttaagggactgctccccg
ctctgcaatccgctgtcctgtgcttccacccctgaagctctccccagcctcgtgtcacta
ggctgtgcaggaggctgtccccctctcagtgtggctggctcagcctcacccttcccattc
ctcactgccctcctctctcttatcaacactctgggccagatccacaaggggctttgcaga
cagctggctgttgtgttgactgccccaggactccagaactactttctccagtgtgtggct
cctgcacctgcgccacagctcacacccttctctgcctgggccctgcgccatgagtaccac
ctacagtacctggtgctttccctagcccagaaagcggcaacatcgcagccagagccagct
gccagcactgccctccatcatgttatggccctggtcctgctgagccggctgctgcctgga
agtgaattcctcgcccacgagctgctgctgagctgtgtgttccggctggggttcctgccg
gaaaatgcttcaggtggtccagaggcagctgacttctctgatgggctgtccttagggaac
agtggggaccctcactgtagacgaggggctctcctagttcaagcttgccaggatctcccc
agcatccgcagctgctacctggcccattgttcaccagctcgagccagtctgctgacctcc
caagcgttgtaccgtggagagctgccgagagtctcaagtctgctgctgcctgtacctaag
gagccactgctgcccactgactggcccttccagccgctgatccatctctaccaccgagct
tcagatactccctctgggctgcctgctgctgacactgtaggcatcaccatgcgggtccta
cagtgggtgctagttctggagagctggcgccctgaggccctctgggctgtgccccctgct
gcccgcctggcacgtctcatgtgtgtgtacctggtggatagcgagctttttcgagagact
cccatacaacgtctagtggctgctcttttagctcggctctgtcagccccaagtcttgcca
aacctcaagctggactgccccctccctggcctgacctcctttcctgacctctatgccagc
ttcttagaccactttgaggccgtctcatttggagaccacttgtttggggctctggtcctc
cttcctctgcagcgccggttcagtgtcaccttgcgccttgccctctttggggagcatgtg
ggagtattgcgagcacttggcctgcctctggctcagctgcctgtgcctctggagtgctac
acagagcctgctgaagacagcctggctctccttcagctctacttccgggccctggttact
ggtgcactccatgcacgttggtgccccgtcctctacactgtagctgtggctcatgtcaat
agtttcgtcttctgccaggacccaaagagctcagatgaggtgaaggctgcccgaaggagt
atgctgcagaaggtgtggctactggcagacaaggatctgcggcagcatctccttcactat
aaactccccaactccagcctcccagaaggctttgaactgtatccccagttacctcgcctg
aggcagcagtaccttcagacgctgcccacagaggtgctccagaacggaggattcaagaca
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system