KEGG   Rattus norvegicus (rat): 311384
Entry
311384            CDS       T01003                                 
Symbol
Sema6d
Name
(RefSeq) semaphorin-6D precursor
  KO
K06842  semaphorin 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    311384 (Sema6d)
SSDB
Motif
Pfam: Sema PSI
Other DBs
NCBI-GeneID: 311384
NCBI-ProteinID: NP_001101238
RGD: 1310910
Ensembl: ENSRNOG00000004812
UniProt: D3ZDA2 A6HPV2
Position
3:131801680..132394578
AA seq 990 aa
MRFFLLWFCVLFLLVSRLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
LMLKIRDTLYIAGRDQVYTVNLNDIPQTEVIPSKDECHNFIKVFVPRNDEMVFVCGTNAF
NPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRS
MGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKN
DMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPTVIGVFTTQLN
SIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKT
SIDFPDDTLSFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAIEVDRSAGPYQNYTVIFV
GSEAGVVLKVLAKTSPFSLNDSVLLEEIEAYNPAKCSAESEEDRKVVSLQLDRDHHALYV
AFSSCVVRIPLSRCERYGSCKKSCIASRDPYCGWLSQGVCERVTLGMLLLTEDFFAFHNH
SAGGYEQDTEYGNTAHLGDCHGVRWEVQSGDSNQMVHMNVLITCVFAAFVLGAFIAGVAV
YCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLT
SRKELPPNTDPKSMAMDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSDKAHGHGASRK
EHPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQNVDHPLTKS
SSKREHRRSVDSRNTLNDLLKHLNDPNSNAKAIMGEIHMAHQTLMLDPVGPMSEVPPKVP
NREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSISAVPKNLNS
PNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGLK
RTPSLKPDVPPKPSFVPQTTSVRPLNKYTY
NT seq 2973 nt   +upstreamnt  +downstreamnt
atgaggttctttctgctgtggttctgtgtgctgttccttctggtctccaggttacgggcc
gtcagcttccctgaggacgatgagccccttaacacggttgactaccactattcaaggcaa
tatccggtttttagaggacgcccttcaggcaacgaatcgcagcataggctggactttcag
ctgatgttgaaaattcgagacacactttatattgctggcagggatcaagtctatacagtg
aacttaaatgacatcccccaaacagaggtgatcccgagcaaggatgaatgtcacaacttc
atcaaagtctttgtcccaagaaatgatgagatggtttttgtctgtggcaccaacgctttc
aacccgatgtgcagatactataggttgagtaccttagagtatgatggggaagaaattagt
ggcctggcacggtgcccgtttgatgcccgacaaaccaatgttgccctctttgctgatggg
aaactgtattctgccacagtggctgatttcctggccagtgatgctgtcatttacagaagc
atgggtgatggatcggccctccgcacaataaaatacgactccaaatggatcaaagaacca
cactttcttcacgccatagaatatggaaactatgtctatttcttcttcagagaaatcgcc
gtggaacataataacttaggcaaggctgtgtactcccgagtggcccgcatttgtaaaaac
gacatgggtggctcacagcgggtcctggagaaacactggacttccttcctgaaggctcgg
cttaactgctcagtccctggagattcctttttctacttcgatgttctgcagtccatcaca
gacatcatccaaatcaatggcatccccaccgtgatcggggtcttcaccacgcagctcaac
agcattcctggctctgcagtctgtgcctttagcatggacgacattgagaaagtgttcaaa
gggcggttcaaagagcagaaaaccccagactctgtttggacagcggttcctgaagacaaa
gtaccaaaaccaaggcctggctgttgtgccaaacatggcctcgcggaagcttacaaaacc
tccatcgactttccagatgataccctgtctttcatcaagtcccacccgctgatggactcc
gctgtcccacccattgctgatgagccctggttcacaaagactcgggtccggtacaggctg
acagccatcgaagtggaccgttcggcagggccgtaccaaaactacacagtcatctttgtt
ggctctgaggccggcgtggtgcttaaagttttggcaaagaccagtcctttctctttgaac
gacagtgtattactcgaagagatcgaagcttataacccagccaagtgcagcgccgagagt
gaggaggacaggaaggtcgtctcgttacagctggacagggatcaccatgctttatacgtg
gccttctccagctgcgtggtccgcatccccctcagccgctgtgagcgctatggctcctgt
aaaaagtcttgcattgcatcacgagacccgtactgtggttggttaagccagggagtgtgt
gagagagtgaccttagggatgctgctgttaaccgaagacttctttgctttccataaccac
agtgctggaggatatgagcaggacaccgagtatggcaacacggcccacctaggggactgc
cacggtgtacggtgggaagtccagtctggagattccaaccagatggtccacatgaatgtc
ctcatcacctgcgtgtttgcagcttttgtcttgggcgcgttcatcgcaggagtggctgtg
tactgctatcgtgacatgtttgttcggaagaacagaaagatccataaagatgcagaatcg
gcccagtcatgcacagattccagtggaagctttgccaagctgaatggtctctttgacagc
cccgtcaaggagtaccagcagaacatcgattcacccaaactgtacagcaacctgctgacc
agtcggaaggagctgcctcccaacacggatccaaagtccatggccatggaccatcgaggc
cagcctccagagctggctgctctccccacgccagagtctacacctgtactccaccagaag
accctgcaggccatgaagagccactccgataaggcccatggccatggtgcttcaaggaag
gaacacccccagttttttccttctagtcctccaccccattccccgttaagtcacgggcat
attcccagtgccatcgttcttccaaacgccactcatgactacaacacatccttctcaaac
tctaacgctcacaaagccgaaaagaagcttcagaacgttgatcaccctctcacaaagtca
tccagtaagagggaacaccggcgctctgtggactccagaaacaccctcaatgatctcttg
aagcatctcaatgacccaaacagtaacgccaaagccatcatgggagaaatccacatggcc
catcagaccctcatgctggacccagtgggaccaatgtctgaggtcccacccaaggttcct
aaccgggaggcatccctatactcccccccctcaacactccccagaaatagtccaaccaag
agagtagatgtccccaccactcctggggtcccaatgacttctctggaaagacaaaggggt
tatcacaaaaactcctcccagaggcactctatatctgccgtgcctaaaaacttaaactca
ccaaacggtgttttgttatctagacagccgagtatgaaccgtggaggatatatgcccacc
ccaacaggggcgaaggtggactatattcaggggacaccggtgagtgtccatctgcagccc
tccctctccagacagagcagctacaccagtaatggtaccctacccaggacgggactaaag
aggacaccatccttaaaacctgatgtgccaccaaagccttcctttgttcctcaaaccaca
tctgtcagaccactgaacaaatacacttactag

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (19)   
   UniProt (2)   
   RefSeq(pep) (17)   
DNA sequence (17)   
   RefSeq(nuc) (17)   
Protein domain (2)   
   Pfam (2)   
All databases (47)   

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