KEGG   Rattus norvegicus (rat): 311426
Entry
311426            CDS       T01003                                 
Symbol
Siglec1
Name
(RefSeq) sialoadhesin precursor
  KO
K06548  sialoadhesin
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04514  Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    311426 (Siglec1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:rno04090]
    311426 (Siglec1)
   04091 Lectins [BR:rno04091]
    311426 (Siglec1)
CD molecules [BR:rno04090]
 Proteins
  311426 (Siglec1)
Lectins [BR:rno04091]
 I-type lectins (Siglecs)
  311426 (Siglec1)
SSDB
Motif
Pfam: Ig_3 Ig_2 I-set ig V-set Ig_4 C2-set_2 Ig_5 C1-set Izumo-Ig ICAM1_3_5_D2 FAM53
Other DBs
NCBI-GeneID: 311426
NCBI-ProteinID: NP_001101247
RGD: 1311953
Ensembl: ENSRNOG00000021243
UniProt: D3ZVM6 A6HQC1
Position
3:complement(138740171..138759966)
AA seq 1609 aa
MCALLSLLLLASVFTPGQTTWGVSSPKDVQGLTGSCLLIPCIFSFPADVSVPNGITAIWY
YDYSGKRQVVIHSGDPKLVDERFRGRAELTGNMDHKVCNLLLKDLKLEDSGTYNFRFEIS
DGNRWSDVRGTTVTVTKDPSPPTITIPHELREGVEVNVNCSTPYLCLQEKQVSLHWQGQD
PTRSVISNFQSLEPTGVYHQTTLHMAPSWQDHRRTLRCQLSLATHSSQKEVYLQVQHAPK
GVEILLSSSGRNILPGNLVTLTCRVNSSYPAVSSVDWVKDGVNLTAKGHVLQLSSATWND
SGVYTCQATNNVGSLASPPLSLHVFMAEVKINPAGPILENETVTLLCSTPKEAPQELRYS
WYKNNILLEDAHAPTLHLPAVTRADTGFYFCEVQNTQGSERSGPVSVVVRYPPLTPDLTT
FLETQAGLVGIFHCSVISEPLATVVLSHGGLTLASSSGENDFNPRFSISSAPNSVRLEIR
DLQPADSGEYTCSATNSLGKSMSSLDFHANDPPRKLTFTARLDLDTSGDGDGRRGILLCQ
VDSDPPAQLQLLHKGHVVATSLPSMCGSCSRRMKVSRASNSLQVEIQKPVLEDEGMYLCE
ASNTLGNSSVSASFNAKATVVVITPSDTLLEGTEASLTCNVTQEVAVSPANFSWFRNGVL
WTQGPLETVRLQPLARTDAAVYACRLLTDDGAQLSAPVVLSVQYAPDPPKLSALLDVGQG
HMAVFICTVDSYPLAHLSLFRGERLLATSLEPQRLSHGRIQAKATANSLQLEVRELGLED
SGNYHCEATNVLGSANSSLFFQVRGAWVQVSPSPELREGQAVVLSCQVPTGVPEGTSYRW
FQDGRPLQESTSSILRIAAISLRQAGAYHCQAQAPDTAAASLAAPVSLHVSYTPRHVTLS
ALLSTGPGRYGHLVCSAQSDPPALLRLFHQNRLVASTLQGPEELASSNPRLHVAVSSNEL
RLEIQFTELEDGGTYTCEATNTLGQASATADFDAQAVRVAVWPNATVQEGQQVNLSCLAW
STHQDSLSYTWYKGGQQLLGVRSISLPSVTVSDATSYRCGVGLPGHTPHLSRPVTLDVLY
APRSLQLTYLLESQGRRLALVLCTVDSRPPAQLTLSHGGQLLASSTEASVPNTLRLELQD
PKPSDEGLYSCSAQSPLGKVNTSLALRLEGVRVRMNPSATVPEGEPVTVTCEDPAALSPA
LYAWFHNGHWLQEGPASSLQFPVTTQAHAGAYFCQVHDTQGTRSSRPASLQILYAPRDAV
LSSFRDSRTRHMVVIQCTVDSEPPAELVLSRNSKVLAASRELHSSAPGISHVQAARNALR
LQVQDTTFGDGNTYVCTARNTLGSISTTHKLLRETDIHVTAEPGLDVPEGTALNLSCHLP
GGSQPVGNSSFTWFWNRHLLHSAPVPTLSFTPVVRAQAGSYHCRAELSTGVTTSPPVMLR
VLYPPKTPTLTVFVEPQGGHQGILDCRVDSEPLASLTLQLGSQLVASNQPHSAPTQPHIR
VTAPPNALRLDIEELGPNNQGEYVCTASNALGSASASAYFGTRALQQLQLFQRLLWVLGF
LAGFLGLLLGLGACYSWRKKNSSKLNVNENSAEMTTQKDNIQEETVAAV
NT seq 4830 nt   +upstreamnt  +downstreamnt
atgtgtgccctgctctccttgctcctgctggcctcggtcttcacaccaggccagaccacg
tggggtgtctccagtcccaaggatgtgcagggcttgactggatcttgcctgctcattccc
tgcatcttcagcttccctgctgatgtatcagtgcctaatggcatcacagccatctggtac
tatgactactcgggcaaacggcaggtggtaatccactcaggggaccccaagctggtggat
gagcgcttcaggggcagagctgaactgacagggaacatggatcacaaggtgtgcaacctg
ttgctcaaagacctgaagcttgaagactcaggcacctacaacttccgctttgagatcagt
gatggcaaccgctggtctgatgtcagaggcaccacagtcactgtgacaaaggatcccagt
ccccccactattaccatcccacatgagctgcgtgaaggtgtggaggtgaacgtcaactgt
tccacaccctacctgtgcctgcaggagaagcaggtcagcctgcattggcaaggccaggac
cccacccgctccgtcatctccaacttccagagcctcgagcccactggcgtctaccaccag
acgaccctacatatggccccatcctggcaggaccacagacggaccctgcgctgccagctg
tcattggccacgcacagtagtcagaaagaggtttatctacaagtgcagcatgcccccaaa
ggtgtggagatcctccttagctcctcaggaaggaacatccttccagggaacctggtcacg
ctcacctgccgggtgaatagcagctatcctgccgtcagttctgtggattgggtcaaggat
ggagtgaacctcacagccaaggggcatgtgctccagctatcctcagcaacctggaatgat
tctggggtctacacctgtcaagcaacaaataatgtgggctctctggcatcacccccactc
agcctccacgtttttatggctgaagtcaagataaacccagcagggcccatcttggaaaat
gagacagtgacactcctctgtagcacccccaaggaggcaccccaggagctccgctacagc
tggtacaagaacaacattcttctggaagacgcccatgccccaaccttgcacctgcctgca
gtcaccagggctgatactggcttctatttctgtgaggtgcagaacacccagggcagtgag
cgctccggtccagtgagtgtggtggtcagatatccacctcttactccagacctgaccacc
ttcttggagacacaggctggacttgtgggcatcttccattgctctgtgatcagcgagccc
ctggctactgtggtactgtcacacggaggtctcacattggcctccagctctggagaaaat
gacttcaacccccgattcagcatttcctctgcccccaactccgtgcgcctagaaatccga
gacttgcagccagcggacagcggggagtacacatgctcagccaccaactcccttggaaaa
tcaatgtccagcctagacttccatgcaaatgatcccccaagaaagctcacattcactgcc
aggctggatttggatacctctggagacggggatggacggcgtggcatcctcttgtgccaa
gtagacagtgatcccccagcccagctacagcttctccacaaaggtcatgttgtggccact
tctctgccatcaatgtgtgggagctgctctcggcgcatgaaagtcagcagagcctccaac
tcactgcaggtggagatccagaagccggtactagaggatgagggcatgtacctgtgtgag
gctagcaacacactgggcaactcctctgtctcagcctctttcaatgctaaggctactgtc
gtggtcatcacaccgtcagatacactgcttgaaggcacagaagccagcctaacttgtaac
gtgacccaggaggttgccgtcagccctgccaacttttcttggttccggaatggagtgctg
tggacccagggaccactggagactgtgaggctgcagcctctggccaggactgatgctgcc
gtctatgcctgccgcctcctcactgacgatggggcccagctctcggctcctgtggtccta
agtgtgcagtatgccccagaccctccaaagctgtcagccctcctggatgtgggtcagggc
cacatggctgtgttcatctgcactgtggacagctatcccctggctcacctgtctctattc
cgtggggagcgcctcctggccaccagcttggaaccccagcgtctatcccatggtagaatc
caggccaaggccacagccaactccctgcagctagaggtccgggaactaggccttgaagac
tctggaaactaccactgtgaagccacaaatgttcttggatcagccaacagttcactcttc
ttccaggtcagaggagcctgggtccaggtttcgccatcacctgagctccgagagggccag
gctgtggtcctgagctgccaggtgcccacaggggtgcctgagggaacctcataccgctgg
tttcaggatggccgccccctccaggagtcaacctcatctatattgcgcattgcagccata
agtctgaggcaagctggtgcctaccattgccaagctcaggctccagacacagctgcagcc
agcctggctgcccctgtcagcctccatgtgtcctataccccacgtcacgtgacactcagc
gccctgctgagcacgggccctgggcgatacggccacctggtgtgcagtgcacaaagtgac
cctccagctctgctgcgactgttccaccagaatcgcctcgtggcctctaccctacaaggc
ccggaggaattggcaagcagtaatccccggctgcatgtggctgtgagctccaatgagttg
cgcctggagatccaattcacagagctggaggatggtgggacctacacatgtgaagccacc
aacacactgggccaggcatctgctacagctgacttcgatgcccaggctgtgcgtgtggcc
gtgtggcccaatgccactgtgcaagaggggcagcaggtgaacctcagctgcttggcgtgg
agcacccaccaggactcactcagctacacatggtacaagggcggccaacaactgcttggt
gtcagatccatctccctgcccagcgttacagtttcggatgctacctcctaccgctgcggt
gtggggctccctggccacacaccccatctctccagacctgtgaccctggatgtcctctac
gctccccgaagcctgcagctgacctacctcctggagagccagggccggcggctggccctg
gtactgtgtactgtggatagtcgcccacctgcccagctaactctcagccacggtggccag
ctcctagcctcctccactgaagcttccgtccccaacaccctgcgcctagagcttcaggac
ccgaagcccagtgatgaggggctctacagctgctctgcccagagcccactgggcaaggtc
aacacatccctggcgcttcggctggaaggtgtacgagtgaggatgaatccctctgctact
gtacccgagggggagcctgtcacagtgacctgcgaggaccctgctgccctctcacctgca
ctctatgcctggtttcacaatggccattggcttcaggagggaccagcttcgtcactccag
ttcccagtgacgacacaggctcatgctggcgcttacttttgccaggtgcatgatactcag
ggcacgcggagctccagacctgccagcctgcaaattctctatgccccccgggatgctgtc
ctgtcttccttccgagactccaggaccaggcacatggtcgtgattcagtgcaccgtggac
agtgaaccacctgctgagctggttctctcccgaaacagcaaggtgctagctgccagccgt
gagcttcacagctcagcacccgggataagccacgtccaggcagcccggaatgctcttcga
ctacaggtgcaagacacgacttttggtgatggcaacacttacgtttgcacagcccggaat
acactgggctccatcagtaccacccacaagcttctgagggagactgatatacatgtgaca
gctgagccaggcttggatgtgccagagggcacagctctaaacctgagctgccacctcccc
ggtggctcccagcctgtgggcaactcttccttcacgtggttctggaatcgccatctccta
cattcagctcctgtgcccacactctccttcacccctgtggtccgggctcaggctgggtcg
taccactgcagggctgagctctccactggggttactacctcacctcccgtcatgctccgt
gtcctctatcctcccaagactcccactctcacagtgtttgtggaacctcagggtggccat
cagggcatcctcgactgtcgagtggacagtgagcccctggccagtctcaccctccagctg
ggcagtcaactagtagcttctaaccaaccgcacagcgctcccacccagccccacatccga
gtcactgctcctcccaatgccttgagactggacatagaggagctcggacctaacaatcaa
ggggagtatgtgtgcacagcctccaacgctctgggctctgcctcagcctcagcctacttt
gggaccagagccctgcagcagctgcagctgttccagaggctgctctgggtcctgggattt
ctggcaggcttcctgggcctgctgctgggcctaggggcctgttacagctggagaaagaag
aattctagcaaactgaatgtgaatgagaattcagcagagatgaccactcagaaagataat
atccaggaggagacggttgctgctgtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (2)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (12)   
   Pfam (12)   
All databases (37)   

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