KEGG   Rattus norvegicus (rat): 311580
Entry
311580            CDS       T01003                                 
Symbol
Samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
  KO
K22544  deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
rno04623  Cytosolic DNA-sensing pathway
rno05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    311580 (Samhd1)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    311580 (Samhd1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    311580 (Samhd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    311580 (Samhd1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     311580 (Samhd1)
SSDB
Motif
Pfam: SAM_2 HD SAM_1 HD_assoc_2 PDEase_I DUF4441
Other DBs
NCBI-GeneID: 311580
NCBI-ProteinID: NP_001178672
RGD: 1308369
Ensembl: ENSRNOG00000006418
UniProt: D3Z898
Position
3:complement(166179742..166214448)
AA seq 620 aa
MQRPDSEQPAKRSRCDGSPRTPPSTRPAAANESADPESSDLRTWGPEDVCSFLEKRGFRE
KKVLDIFRENKISGSFLPFLDENLLESLGVSSLEQRKKMIECIQKLNQSRIDLMKVFNDP
IHGHIEFHPLLIRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVRA
LAEKQPELQISERDMLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPDIKWRHEQGSVEMF
EHLVNSNELKLVMKNYGLVPEEDITFIKEQIMGPPVSPVKDCLWPYKGRPAKKSFLYEIV
ANKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARICEVDDETRAHKVKHICTREKE
VGNLYDMFHTRNCLHRRAYQHKIGNLIDIMITEAFLKADPHVEITGTEGKKFRISTAIHD
MEAFSKLTDNIFLEILYSTDPQLSEARNILRNIECRNLYKYLGETQPKREKIKKAEYDKL
AQEVANAKPEIAPDVELKAEDFIVDVINMDYGMEDKNPIDNVHFYCKSDSRQAVTITKDQ
VSQLLPQKFAEQLIRVYYKKKDKKSLDAAGKHFIQWCALRDFTKPQDGDIIAPLITPLKW
NKKTSSCIEEVSKVKTCLKF
NT seq 1863 nt   +upstreamnt  +downstreamnt
atgcagagaccagactcggagcaacctgctaagcggtcccgctgcgatggcagcccaagg
acgccaccgagcacccgtcctgcagcagcgaacgagtctgcagatcccgaaagcagcgac
ctccgaacctggggtcccgaggacgtgtgctccttcttagagaaacgtggtttccgagag
aaaaaagtgctggacatcttcagagaaaataaaatcagtggttcatttctgccctttttg
gatgagaatcttctcgaaagtctgggagtaagttccttggagcagaggaagaagatgata
gaatgtatccagaagctgaatcagtctcggattgatctaatgaaggtatttaacgatcct
attcatggccatattgaattccaccccctcctcatccgaatcattgacacacctcagttc
cagcggcttcgctacatcaagcagctgggaggcggttactacgtcttccctggcgcgtca
cacaatcggtttgaacacagtctcggagtggggtacctagcaggctgcctcgtgcgagcg
cttgccgaaaaacagccagagctgcagatcagtgaacgagatatgctctgtgttcagatc
gcggggctctgccatgaccttggtcatgggccattctcccatatgtttgatggaagattt
attccacttgctcgcccagacataaagtggaggcatgaacagggctcagttgagatgttt
gagcatctggttaactccaatgaactcaaacttgtcatgaagaactatggtctcgtccct
gaagaagacattacctttatcaaggaacaaattatgggaccacctgtatcaccagtcaaa
gactgcttgtggccgtataaggggcgccccgccaagaagagcttcctgtacgagatagtg
gctaacaaaagaaatggcattgatgtggacaaatgggactattttgccagagactgtcac
catcttggaatccaaaataattttgattacaagcgcttcattaagtttgcccgtatctgt
gaagtggacgacgagacccgggcacataaggtgaagcacatttgtaccagagaaaaggag
gttggaaacctgtacgacatgttccacacacgcaactgcttacaccgcagagcttatcag
cacaaaatcggcaacctcatcgatataatgattaccgaagctttcctcaaagcagacccc
cacgtggagattaccgggaccgaagggaagaagtttcgaatttccacagccattcatgac
atggaagccttcagtaagctgacagataacatctttctggagattttatactccacggat
ccacagttgtctgaggcccggaatattttaaggaacattgaatgccgtaatctgtacaag
tatttgggtgagacccagccgaagcgtgagaagattaaaaaggcagagtatgacaagctt
gcccaagaagttgctaatgccaaacctgaaattgccccggatgttgaactaaaggctgaa
gatttcatcgttgatgttatcaatatggattacgggatggaagacaagaacccaattgat
aatgttcacttctattgtaagagtgacagcaggcaagcggtcacgatcactaaagaccag
gtgtcccaactgctgccacagaaattcgcagagcagctcatccgcgtgtactataagaag
aaggacaagaagagcttggacgccgccgggaagcacttcattcagtggtgtgcgctcagg
gacttcaccaagccacaggatggtgacattatagcgcctctcataacgcctctgaaatgg
aataaaaagacttcatcttgcatcgaagaagtatccaaagtaaaaacgtgtctcaagttt
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (11)   
   RefSeq(nuc) (3)   
   GenBank (4)   
   EMBL (4)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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