KEGG   Rattus norvegicus (rat): 311716
Entry
311716            CDS       T01003                                 
Symbol
Col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X8
  KO
K24357  collagen type XX alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    311716 (Col20a1)
SSDB
Motif
Pfam: fn3 VWA Collagen Pur_ac_phosph_N VWA_2 VWA_3 Interfer-bind
Other DBs
NCBI-GeneID: 311716
NCBI-ProteinID: XP_008760825
RGD: 1563901
Ensembl: ENSRNOG00000010326
Position
3:188477663..188512326
AA seq 1362 aa
MSLQGSYLRFCLWMFLGTTLALGQGQVSSRLRLAVLPEDRLQMKWREAEGSGLGYLVQVT
PMAGDLEQELVLTTKTPKATVGGLSPSKSYTLQIFELTDSGPVLLARREFVIEDLKSQSL
GRGSRRLAGATLEPPSFPLRDPDSEKTSEPSIAFTSSRDLPILGVASKDQRKLKQGLGVQ
DSAQPTPDLERQSHTAVSVGKRGKLDDPQFQCTPPTPADIIFLVDGSWSIGHNNFQQVKD
FLASIITHFAIGPDKVQVGLTQYSGDPQTEWDLNSFHTKEQVLAAVHHLHYKGGNTFTGL
ALTHVLGQNLKPAAGVRPEAAKVLILVTDGKSQDDVRTAARVLKDQDIDVFTVGVKNVDE
AELKLLASQPLDITVHNVLDFPQLTTLAPLLSRLICQKIQGRGPVKPAAGTRILDPLPTP
TRLTLTHVTSSSIHLSWTPALYPPLKYLIVWQPSRGGAPKEVVVEGPVSSMELGNLTSNT
EYSVSVLPVYESGVGKSLQGRATTAPLPPPGPLTLAAVTPRTLHLTWQPSAGATQYLVQY
LLAASTGEEQKREVHVGRPEVVLDDLEPGQDYEVSVQSLRGPEASEARNIHARTPVPGPP
RHLSFSDVRYNSTCVSWEAQRPVRLVKVSYVSSDGSHSGQIQVPGNVTSATLGPLSSSTV
YTIRVTCFYLRGGSSVLTGHVTTQKAPSPSQLSVTELPGDTVKLSWLATALSGVLVYQIK
WMPLGEGKAHEISVPGTLGTAILPGLMKHVEYEITILAYYRDGTRSDPVSLRYTPSAANR
SPPSSLALSSETPNSLQVSWAPPSGHVLHYRLNYTLASGSGPEKSISVPGTRSHVVLRDL
MSAAKYRVLVSAVYGAGESMAVSATYRTAACPALHPDSSLSGYDLMMAFGLVAKEYASIR
GVAMEPSAFGVAPTFTLFKDAQLMRRVSDVHPATLPPEHTIVFLVRLLPETPREAFALWQ
MMAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEITFDLQDAKKIFFGSFHKVHIAVGHS
KIRLYVDCRKVAERPIGDAGSPPTAGFITLGRLAKARGPRSSSATFQLQMLQIMCSDTWA
DKDRCCELPALRDGETCPAFPLACTYSSETPGPPGPQGPPGLPGRNGTPGQQGHPGPKGE
PGPPGQTGPEGPGGQQGSPGTQGRAVQGPMGPPGAKGEKGDHGLPGLQGLSGQQGIPGKT
GLQGPKGMRGLEGPAGLPGPPGPRGFQGLAGASGTSGEQGPPGAVGPTGLPGSKGERGEK
GEPQSLATIFQLVSQACESAIRTHVMKLNSFLHENARPPMPFMAETAKLSRPRAIDPGLH
NKALLPGDWGHILHHEDEGEPVAISHTSKPVLQEVQTPEPLE
NT seq 4089 nt   +upstreamnt  +downstreamnt
atgagcctccaaggctcctacctccgcttctgcctctggatgttcttgggcaccaccttg
gcactggggcagggacaagtaagtagccgtctgaggctggcagtactgcccgaggatcga
ctgcagatgaagtggagggaagcagagggaagtggccttggctatttggtgcaagtgaca
cctatggcaggggacttggagcaggagctggtactgaccaccaagacccccaaagccact
gtgggtggcctgagcccttccaagagctacaccttacagatcttcgagctcactgactct
gggcctgtcctgctagcacgaagggagtttgtaattgaggatctaaagagccaatctttg
ggcagaggaagccggaggctggcaggagccaccctggagcctccctccttccctctgagg
gacccagactctgagaaaacatctgagcccagcattgccttcacctcaagcagggacctt
cccattctcggagtggccagtaaggatcagaggaaactcaagcagggccttggagtacaa
gactctgcccagccaaccccagacctggagaggcagagccacaccgcagtctctgtggga
aagcgagggaagctagatgacccccagttccagtgcacacccccaacacctgctgacata
atcttcctggtggatgggtcctggagcatcggccacaacaactttcagcaggtgaaagac
ttcctggctagcatcatcacacactttgcaataggaccagataaagtccaagtaggtctg
actcagtacagtggagacccccagaccgagtgggacctgaactccttccacaccaaggag
caagtgctagcagcagtacaccacctccactacaaaggaggaaacacgttcacaggcctt
gccctaacccatgtgctggggcagaacctgaagccagcagcaggtgtccgtccagaggca
gccaaagtgttgattctggtgacagacggcaagtctcaggatgatgtgcgcacagctgcc
agagtccttaaggaccaggacattgatgtcttcactgtgggtgtgaagaatgtcgacgag
gccgagctgaagctcctggcatcccagccgctggacatcactgtccacaacgtgctggac
ttccctcagctgaccaccttagcccctctgctcagccgtcttatttgccaaaaaattcag
ggcagaggcccagtcaaaccagcggcgggtactcggatcctggaccctctccccacgccc
accagactgaccctgacccacgtcacctcatccagtatccacctgtcttggactccggcc
ttatacccacccctcaagtatctaattgtatggcagccttctaggggtggtgcccccaag
gaggtggtggtggaggggcctgtctcatccatggagcttggaaacctgacctccaacaca
gaatactcggtctctgtgcttcctgtctacgagagtggggttggcaagagtctgcaagga
cgggcaaccacagcacccctgcctccacctgggccactgaccctagctgcggtgacaccc
agaactctccaccttacctggcagccctctgctggggccactcaatacttggtacagtac
ttgctggctgcctccactggggaggaacaaaagagagaggtacatgtaggacggcctgag
gtagtgctggacgatctggagcctggccaggactatgaggtttcagtgcagagccttcgt
ggaccagaggccagtgaggcccggaacatccatgccaggacccctgtcccggggccccca
agacacctgagtttctcagatgtgcgctacaactcaacctgtgtgtcctgggaagcccag
aggcctgtgcgcctggtcaaggtcagctacgtctctagcgatggcagccactctgggcag
attcaggttcctgggaacgttacctcagctactctgggcccactttcttcctctaccgtg
tacaccatccgagtcacctgtttttacctcaggggtggttcctccgtgctgactggccat
gtgaccacacagaaagcgcctagccctagccagttgtcggtgacggagctcccgggagat
acagtaaagctgtcatggttggccactgccttgtctggtgtacttgtttatcagatcaag
tggatgcccttgggagaggggaaggcccatgagatctctgtcccagggacccttggcaca
gccatcttgcctggtctgatgaagcatgtggaatatgagatcaccatccttgcctactat
agggacggcactcgcagcgaccccgtgtccctccgctacaccccctctgcagcaaacagg
agccccccatccagcctggccttgtcctcggagacccccaacagcctgcaggtcagctgg
gcaccaccaagtggccatgtcctccattaccggctcaactacacactggcctcaggctct
ggaccagagaaatcgatctctgtaccaggcaccaggagccatgttgtacttcgtgatctg
atgtctgccgccaagtacagggtcctggtctcagctgtctatggagcaggggagagcatg
gcagtgtctgccacataccgcacagcagcctgcccagccctgcacccggacagttccctc
tcagggtatgacctgatgatggcctttggccttgtggcaaaggagtatgcctctattcga
ggggtggctatggagccctcagccttcggtgtggccccaaccttcactctcttcaaggat
gctcaactgatgcggcgggtcagtgacgtccacccagcaaccctgccaccagaacacacc
attgtcttccttgtgcgtctacttcctgaaacaccccgggaagcctttgcactgtggcag
atgatggctgaagacttccagcctatcctcggggttcttctggatgctggcagaaagtct
ctgacttacttcaaccatgattccagagcagccttgcaggagatcacctttgacctgcag
gatgcaaagaagattttctttggaagcttccacaaggtacatatagctgtaggccactct
aagatcagactttacgtggactgtcggaaggtggctgagcggcccattggggatgctggc
agcccacccacagctggtttcatcacactagggaggctagccaaggccagagggccacgg
agcagctcagccacattccagctccagatgttgcagatcatgtgcagcgatacgtgggcg
gacaaggacaggtgctgcgagcttcctgcattgagggatggagagacatgcccggccttc
cctttagcctgtacctactcatctgagacccctgggccaccagggccccaaggccctcca
ggcctccctggaaggaatggcactccaggacagcagggacacccaggacccaagggagag
cctggcccacctggacaaacaggacccgaaggccctggaggtcagcaggggtcaccaggg
acccagggccgtgcagtccagggacccatggggccaccaggagccaaaggagagaagggg
gatcacggcctcccgggcttgcagggcctctctggccagcaaggcatccctgggaaaact
ggcctacaaggaccaaagggaatgagaggactggagggacctgctgggctgcctggacca
cctggccccaggggattccagggcttggcaggggccagcggtaccagtggagagcaaggg
cccccaggagctgtgggtcccacaggtctaccagggtccaaaggtgaacgaggagagaag
ggagagccacagtcccttgccaccatcttccagctggtgagccaggcctgcgagtcagcc
atacggacacacgtgatgaagctgaattccttccttcatgagaatgcccgtcccccgatg
cccttcatggcagagacagccaagctaagcagacccagagctatagatcctggattacac
aacaaggctctacttcctggagactggggacatatcctccaccatgaggatgaaggtgag
cctgtggctatcagccacacaagcaaacctgtactgcaggaggtgcagaccccagagccc
ctggagtga

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   RefSeq(pep) (9)   
DNA sequence (12)   
   RefSeq(nuc) (12)   
Protein domain (7)   
   Pfam (7)   
All databases (69)   

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