KEGG   Rattus norvegicus (rat): 311723
Entry
311723            CDS       T01003                                 
Symbol
Sox18
Name
(RefSeq) transcription factor SOX-18
  KO
K09270  transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    311723 (Sox18)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    311723 (Sox18)
SSDB
Motif
Pfam: HMG_box Sox17_18_mid HMG_box_2
Other DBs
NCBI-GeneID: 311723
NCBI-ProteinID: NP_001019952
RGD: 1311718
Ensembl: ENSRNOG00000016248
UniProt: F7FNP9 Q4V7E4
Position
3:complement(189163000..189164802)
AA seq 377 aa
MQRSPPGYGAQDDPPSRRDCAWAPGLGAAAEPRGLPVTNVSPTSPASPSSLPRSPPRSPE
SGRYGFGRGERQTADELRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKEL
NTAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKVRRLEPGLLLPGLVQPSAPPEP
FAAASGSARSFRELPTLGAEFDGLGLPTPERSPLDGLESGEASFFPPPLAPEDCALRAFR
APYAPELARDPSFCYGSSLAEALRTAPPAAPLAGLYYGTLGTPGPFPNPLSPPPEAPSLE
GTEQLEPTADLWADVDLTEFDQYLNCSRTRPDATALPYHVALAKLGPRAMSCPEESSLIS
ALSDASSAVYYSACISG
NT seq 1134 nt   +upstreamnt  +downstreamnt
atgcagagatcgccgcccggctacggcgcacaggacgacccgccctcccgccgcgactgt
gcatgggcccccggactcggggccgctgctgagccgcgcggcctcccggtcaccaacgtc
tcgcctacctcgcctgcctcgccgtccagccttccgcggagcccaccgcgcagccccgaa
tcagggcgctatggctttggccgcggagagcgccaaacggccgacgagttgcgcatccgg
cggcccatgaacgcctttatggtgtgggcgaaggacgagcgcaagcgactggcgcaacaa
aatccggatctccacaacgcagtgctgagcaagatgctgggcaaagcgtggaaggagctg
aacacggcggagaagaggcccttcgtggaagaggccgaacggctgcgtgtgcagcacttg
cgcgaccatcccaactacaagtaccggcctcgccgcaaaaaacaggcgcgcaaggtccgg
aggctggagcctggcctcttgctcccgggcctcgtgcagccgtctgcgccgccggaaccc
ttcgctgcagcatcaggctcagctcgctccttccgcgagctacccactctgggtgcggag
ttcgacggcttggggctacccacgcccgagcgctcgcctctggacggcctggagtctggc
gaggcctccttcttcccaccgcctttggcgcccgaggactgcgctctgcgggctttccgg
gcgccctatgccccggagctggcacgggacccgagcttctgctacgggtcatccctggct
gaggcgctcaggacagcgccgcctgccgcgccgctcgcgggcctctactatggcaccctg
ggcactccgggcccgtttcccaatcctctgtcaccaccacctgaggccccgtctcttgag
ggcacagagcaattggagcctaccgccgacctttgggccgatgtggacctcaccgaattc
gatcagtatctcaattgcagccggactcgaccggatgccactgcactcccctaccatgtg
gcactggccaaactaggtccgcgtgccatgtcctgtccagaggaaagcagcctcatttct
gcactgtctgacgccagcagcgcggtctattacagcgcttgcatctcaggctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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