KEGG   Rattus norvegicus (rat): 311909
Entry
311909            CDS       T01003                                 
Symbol
Rc3h2
Name
(RefSeq) roquin-2
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    311909 (Rc3h2)
   04121 Ubiquitin system [BR:rno04121]
    311909 (Rc3h2)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    311909 (Rc3h2)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    311909 (Rc3h2)
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-CCCH zf-RING_UBOX zf-RING_2 zf-CCCH_4 zf-C3HC4_3 Prok-RING_4 zf-C3HC4 zf_CCCH_4 zf-C3HC4_4 DUF4844 zf-C3HC4_2
Other DBs
NCBI-GeneID: 311909
NCBI-ProteinID: NP_001101309
RGD: 1304833
Ensembl: ENSRNOG00000009196
UniProt: A6JET0
Position
3:complement(41531319..41596496)
AA seq 1187 aa
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVAVNSTVTTTAGNVISVI
GSTETTGKIVPSTNGISNTESSVSQLIPRSADSAGRTLETVKKVGKVGTNGQNAGPSAES
VSENKIGSPPKTPVSNAAATSAGPSNFGTELNSLPPKSSPFLTRVPVYPQHSENIQYFQD
PRTQIPFEVPQYPQTGYYPPPPTVPAGVTPCVPRFVRSNNVPESSLPPASMPYADHYSTF
SPRDRMNSSPYQPPPPQQYGPVPPVPSGMYAPVYDSRRIWRPAMYQRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVTCQPPNDPRTTVPLPREPCGHLKSSCEEQLRRKPDQ
WTQYHTQKTPVSSTLPVATQSPTPPSPLFSVDFRSDFSESGSGTKFEEDHLSHYSPWSCG
TIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFEAQRRTKEEDPIIPFSDGPII
SKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNDATSSA
HYIERDRFIVTDLSGHRKHSSTGDLLSLELQQAKSNSLLLQREANALAMQQKWNSLDEGR
HLTLNLLSKEIELRNGENDYTEDTVDTKPDRDIELELSALDTDEPDGQSEQIEEILDIQL
GISSQNDQLLNGTAVENGHPVQQHQKDPVKQKRQSLGEDHVILEEQKPILPVTSCFSQPR
PVSISSASCLPITTSVSVGNLILKTHVMSEEKNDFLKPIANGKMVNS
NT seq 3564 nt   +upstreamnt  +downstreamnt
atgcctgtgcaggccgctcaatggacagagtttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcgtgtccttttgaccagactgccataaacacagac
attgatgtgctccctgtcaactttgcacttcttcagttagttggagcccaggtaccagat
catcagtcaataaagttaagtaatctaggtgagaataaacactatgaagtggcaaaaaaa
tgtgtggaggatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgccctgagccgtccaatgcaaaggaaactagttacacttgtaaactgt
caactggtggaggaagaaggtcgtgtcagagctatgcgagcggcccgttcactaggagaa
agaactgtgacagaactgatactgcagcaccagaaccctcagcagctgtctgccaacctg
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaagcc
ttgaagttggtattgctggcattagaagatggttctgctctctctaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggc
catgttgtgcagctactgtaccgagcttcttgttttaaggttactaaaagggatgaagac
tcttccctgatgcagctgaaggaggaatttcggagttatgaggcactacgcagagaacat
gatgcccaaattgttcatattgccatggaagcaggactccgtatttcacctgagcagtgg
tcttcactgctatatggggacttggctcataaatcacacatgcagtctatcattgataag
ctacagtctccagaatcatttgcaaagagtgtccaagaattgacaattgttttgcaacga
acaggtgaccccgctaatttaaatagactgaggcctcatttagagcttcttgcaaacata
gatcctaatccagatgctgtttcaccaacttgggagcaactggaaaatgcaatggtagct
gttaaaacagtggttcatggtcttgtggacttcatacaaaattatagtaggaaaggtcat
gagacaccccagccacagccaaacagcaagtataaaactagtatgtgccgagatttacga
caacaagggggttgtccacgaggaacaaattgtacatttgcccattctcaggaagagctt
gaaaagtaccgattaaggaacaaaaagatgagcgcgactgtaagaacatttcctcttctg
aataaagttgctgtaaacagcactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaactgggaaaattgttccaagtacaaatggaatttcaaatacagaa
agcagtgtttcccagctaatcccacgaagtgctgacagtgcaggaaggactttggagact
gtgaagaaagttgggaaagttggcactaatggtcagaatgctgggccctctgcagagtct
gtgtctgaaaataaaattggttctccacccaagactcctgtaagtaatgcagcagctacc
tccgctgggccctctaattttggaacagagctgaattccctgcctcccaaatccagccca
tttctaactcgagttccagtatatcctcagcattctgaaaacatccagtattttcaagat
ccaaggactcagataccttttgaagtcccacaatacccacaaacaggatactacccacca
cctccaacggtaccagctggtgtgactccctgtgttcctcgctttgtgaggtccaataat
gttccagagtcctccctcccacctgcttccatgccatatgctgatcattacagtacattt
tcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagcagtatgga
ccagttcctccagtaccctctgggatgtatgctcctgtgtatgacagcaggcgcatctgg
cgcccagctatgtaccagcgagatgacattattagaagcaattctttacctccaatggat
gtgatgcactcatctgtctatcagacatctttacgggaaagatacaactcattagatggt
tattattcagtgacttgtcagccaccaaatgacccaaggacaactgtgcctttaccaagg
gaaccttgtggtcatttaaaaagcagttgtgaggaacagttaagaagaaagccagatcag
tggacacagtatcatacccagaagacacctgtctcttcaactcttcctgtggcaacacag
tcaccaacaccaccttctcctttgttcagtgtagacttcagatcggatttctctgagagt
gggagtggcacaaaatttgaggaagaccatctttcccattattctccttggtcttgtggc
actataggctcttgtataaatgccattgattcagagcccaaagatgtaattgccaattca
aatgctgtgctgatggacctggacagtggtgatgtaaagagaagagtgcatttatttgaa
gctcagagaaggacaaaagaagaagacccaattattccctttagtgacggacccattatc
tcaaaatggggtgcaatttcccgatcctcccgaacaggttaccatacaacagatcccgtc
caggcaactgcttcccaaggaagtgcaactaagcccatcagtgtatcagattatgtccct
tatgttaatgctgtcgattcaaggtggagttcatatggtaacgatgccacatcatcagca
cactatattgaacgggacagattcattgttaccgatttatctggtcatagaaagcactcc
agtaccggagacctcttgagccttgagcttcagcaggccaagagtaactcattacttctt
cagagggaagctaatgctctggccatgcaacaaaagtggaattccctggatgaaggccgt
catcttactttaaatctcctaagcaaggaaattgaactgagaaatggagagaatgattac
acagaagacactgtagataccaagcctgatagagatattgagttagaactttcagccctt
gatactgatgagcctgatggccaaagtgaacaaattgaagaaattctggacatacaactt
ggtatcagttctcaaaatgatcagttgctaaatggaactgcagtggaaaatggtcatcct
gtccagcagcaccaaaaggaccccgtaaagcagaagagacagagtttaggtgaagaccat
gtgattctggaggagcaaaaaccaattctgccagtaacatcttgctttagccagccacgc
ccagtgtctattagcagtgcaagctgcctccctatcaccacatctgtcagtgttggcaac
ctcattctgaaaactcacgttatgtctgaagagaaaaacgactttttaaaacctattgca
aatgggaagatggttaacagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (14)   
   Pfam (14)   
All databases (32)   

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