KEGG   Rattus norvegicus (rat): 312227
Entry
312227            CDS       T01003                                 
Symbol
Cnot4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    312227 (Cnot4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    312227 (Cnot4)
   03019 Messenger RNA biogenesis [BR:rno03019]
    312227 (Cnot4)
   04121 Ubiquitin system [BR:rno04121]
    312227 (Cnot4)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     312227 (Cnot4)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    312227 (Cnot4)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     312227 (Cnot4)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     312227 (Cnot4)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    312227 (Cnot4)
SSDB
Motif
Pfam: zf-RING_4 RRM_1 zf-C3HC4_3 zf-UDP zf-C3HC4_2 zf-RING_2 Rtf2 Nup35_RRM_2 DZR_2 zf-CCCH_2 Torus zf-C3HC4
Other DBs
NCBI-GeneID: 312227
NCBI-ProteinID: NP_001032871
RGD: 1310318
Ensembl: ENSRNOG00000010795
UniProt: Q498M7
Position
4:complement(64679903..64781432)
AA seq 710 aa
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP
PGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPSD
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKEL
SVQDQPSLSSTSLQNSSSHTTSAKGPGSGFLHPAAPANANSLNSTFSVLPQRFPQFQQHR
AVYNSFGFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPIAD
NNSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSVSWDSP
GSWTDPAIITGIPASSGNTLDSIQDDNPPHWLKSLQALTEVDGPSAASPQPHHSAPFSTQ
IPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgtctcgcagtcctgatgcaaaggaagaccctgtggaatgccctctttgcatggagccc
ttggaaatagacgatattaactttttcccttgcacctgtggctaccagatttgccgattt
tgttggcatcgaatccgcactgatgagaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttataaaccactttcccaggaagaattgcaaaggataaagaat
gagaaaaaacagaaacaaaatgagagaaaacagaaaatctcagaaaatcgaaaacatttg
gctagtgtacgtgttgtacaaaaaaaccttgtatttgtcgtaggtctgtcacagcgccta
gcagacccagaagttttaaaacgaccagagtattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccgagtgccagtgcttat
gtaacctatatccggtcagaagatgctctcagagcaatacagtgtgtcaacaatgtggtg
gtagatggcaggacactaaaggcatccttaggcacaacaaagtactgcagctacttcctg
aagaacatgcagtgcccgaagcccgactgcatgtatctgcacgaactgggggatgaggca
gccagcttcaccaaggaggaaatgcaggcgggtaagcaccaagagtatgaacagaagctc
ctccaagaattatataaattaaatcccaattttcttcagttatctacgggttcagttgat
aagaataagaacaaagtgacaccattacaaagccccattgacaaaccttcagattctctc
agtatagggaatggtgataattcccaacagatatctaacagtgatacgccttcaccacca
cctggtttatcaaaatccaatcctgtcatccccatcagttcatccaatcacagtgcaagg
tctccttttgaaggggcagtaacagagtcacagtcattattctcagacaatttccgccac
cccaaccctataccaagtgggcttcctccttttcccagctctccacagacacccagtgat
tggcctaccgctccagaaccacagagcctcttcacatcagaaacaatcccagtatcatca
tctacagactggcaagcagcatttggctttggttcttctaaacagccagaggatgacttg
gggtttgatcccttcgatgttactcgaaaagccttagcagacctgattgagaaggaacta
tccgtccaagatcaaccttccctttcttccacgtctcttcagaactcctcctcacacact
acaagcgccaaaggtccaggctctggattcctgcaccctgctgcacctgccaatgccaac
tctcttaatagtaccttttcagtcttgccacagaggttccctcagtttcagcagcaccga
gcagtttataattcgttcggttttccaggccaggcagcccgctatccttggatggccttt
ccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaatagtaatttc
ttggacttgaatctcccgccacagcacaacacaggtctgggagggatccccatagcagac
aacaacagttctgtagagagtttaaatatgaaggaatggcaggacgggctaagggcactt
ctacccaacattaacatcaactttggtggactgcccaattcttcttccccctccaacgcc
aaccacagtgcaccaacgtccaacactgccaccacggacagcgtgagttgggacagccct
ggcagctggacagacccagccatcatcacaggtattccagcctcttcaggaaacacttta
gactctattcaagacgacaatcctccacactggctaaaatcccttcaggccctcacagag
gtggacggccccagcgctgcctcgccacagccccaccacagcgcccccttcagcacacag
atccctctgcacagagccagttggaacccctacccacctccttcaaatccttccagcttc
cactccccacccccaggcttccagacagccttcagaccccccagcaaaacccccacagac
ctgctacagagttcaacactggaccgccactaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (13)   
   UniProt (1)   
   RefSeq(pep) (12)   
DNA sequence (16)   
   RefSeq(nuc) (12)   
   GenBank (2)   
   EMBL (2)   
Protein domain (12)   
   Pfam (12)   
All databases (55)   

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