KEGG   Rattus norvegicus (rat): 312398
Entry
312398            CDS       T01003                                 
Symbol
Smarcad1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
  KO
K14439  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04550  Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    312398 (Smarcad1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    312398 (Smarcad1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    312398 (Smarcad1)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD HDA2-3 ERCC3_RAD25_C CUE Pox_D5 HHH_3
Other DBs
NCBI-GeneID: 312398
NCBI-ProteinID: NP_001101334
RGD: 1309640
Ensembl: ENSRNOG00000006391
UniProt: D3Z9Z9
Position
4:95639722..95709055
AA seq 1024 aa
MNLFNLDRFRFEKRSKIEEAPEAAPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDVT
EKTEDSSVPEPPDNESKASLSCFQNQRTIQEYIDLSSDSEDVSPNCSSTVQEKKFSKDTV
IIVSEPSEDEESHDLPSATRRNDISELEDLSELEDLKDAKLQTLKELFPQRSDSDLLKLI
DSTSTMDGAIAAALLKFGDAGGGPRKRKLSSSSEAYEEDEANDDQSLKKPRGDRREESNE
SAEASSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDVQCA
SQSEVTNGKEVARNQNYSKNAAKIKMKQKISMKPQNGFNKKRKKNVFNPKKAVEDSEYDS
GSDAGSSLDEDYSSCEEVMEDGYKGKILHFLQDASIGELTLIPKCSQKKAQKIIELRPFN
NWETLFTKMSKINGLSEDLIWNCKTVIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGG
WNIEQPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQE
GNKGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVT
TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQN
NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRR
VKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMA
NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHINS
YQLDMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG
KTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDR
CHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADEGSMPADIATLLKT
SMGL
NT seq 3075 nt   +upstreamnt  +downstreamnt
atgaatcttttcaacttggaccgttttcgctttgagaaaaggagtaagattgaggaagct
cctgaagcagcccctcagccctcccagcccggtccttcgtcaccaatttctcttagtgct
gaagaggagaatgctgaaggggaagttagcagggcaaacaccccagactcagatgtaact
gaaaaaacagaagattctagtgttccagaacctccagacaatgaaagcaaagcaagttta
tcatgtttccaaaatcaaagaacaatacaggaatatattgatttatcatctgatagtgaa
gatgtttctccaaattgttccagtacagttcaagagaaaaaattcagcaaagacacagta
attatagtttcagagccatctgaagatgaagaatcccatgaccttccttctgctacacga
agaaatgacatctcagaactggaagacctttcagaattggaagatcttaaagatgctaag
cttcagacattgaaggaactgtttccacaaagaagtgacagtgatcttctaaagttgatt
gactcaacaagcactatggatggagccattgctgctgccttgctgaagttcggtgatgca
ggtggtggacccaggaaaagaaaattatcttcttcttctgaggcatatgaagaggatgaa
gctaatgatgatcagtctttaaaaaagccgcgaggggatcgtagagaagaatcaaatgag
tctgcagaagctagcagcaactgggaaaagcaagaaagtattgtgttgaaattgcagaag
gaattcccaaattttgataaacaggagttaagggaagtgcttaaggagcatgagtggatg
tacacagaagccttggagtctctgaaagtgtttgcggaagatcaagatgtgcagtgtgct
tcacaaagtgaggttacaaatggaaaagaagttgcaaggaatcaaaattattctaaaaat
gcagctaaaataaagatgaaacagaaaatttccatgaaaccacaaaatggctttaacaag
aaacgtaagaaaaatgtatttaatcctaagaaagccgtagaggactctgagtatgattcg
ggttctgatgctgggagctcactggatgaggactacagcagttgtgaagaagtgatggag
gacggctataaaggcaaaattctccacttccttcaagatgcttcgattggtgaactgact
ttgattcctaagtgttctcagaaaaaggctcagaagataatagaactccggccctttaat
aattgggaaactctgtttacaaagatgtccaaaatcaatggcctatctgaagatttgata
tggaattgcaaaacggtaattcaagaaagggatgtagttataagacttatgaacaaatgt
gaagatatttcaaataaattaaccaaacaagttaccatgcttactggaaatggaggtgga
tggaacatagaacagccttcccttctaaaccaaagtttgtcactcaagccctatcagaag
gttggtttgaattggctggcattggtgcataaacatggacttaatggcattttggcagat
gaaatgggcctaggaaaaaccattcaagccattgccttcctggcatacctctttcaagag
ggtaataaagggcctcatttgattgttgttccggcctccaccatagataactggttaaga
gaagttaacttatggtgccctactttaaatgtgctctgttactatggttctcaagaagag
cgtaaacaaattagattcaacatccataataaatatgaagattacaatgtaattgttacg
acgtataattgtgcaatcagcagctctgatgaccgcagtctctttcgacgcctgaaactg
aattatgcaatttttgatgagggccatatgctgaagaatatgggctctatccgctaccag
cacctaatgacaattaatgcacgaaaccggttactactcacgggaacacctgtgcagaat
aatctgctagaactcatgtcattgttgaattttgttatgccacacatgtttagcagtagc
accagcgaaatccgaaggatgttttcttctaaaacgaaaccagcagatgaacagagtata
tacgaaaaggagagaatagcacatgcaaaacaaatcataaagccctttattctcagaaga
gtgaaagaggaggttcttaagcttctgcctcccaagaaggatcagattgagctatgcgca
atgtcagagaagcaggagcaactctactcgggcctttttaacagattgaaaaagtctatc
aacaacctggaaaaaaacacagagatgtgcaatgtcatgatgcaattaagaaaaatggcc
aatcatcctttactacaccgccagtattacacggctgagaagctgaaggagatgtctcag
ctaatgctgaaggaacctacgcattgtgaggcaaaccccgacctgatctttgaagacatg
gaagttatgacagattttgaactacatgtcctttgtaaacagtatcaacacattaatagt
taccagttagacatggatttaattttagattctgggaaattccgaaccttaggatgcatc
ttgtctgagttgaaacagaagggtgatagagtggtattattcagccagtttaccatgatg
ctggatatattagaggttctcttaaagcaccatcaacataggtacctccgattagatgga
aagactcagatttctgaaaggatccatctaattgatgagtttaatacagatatggatatc
tttgtgtttctcttgtcaactaaggcgggtggattaggaataaacctgacctcagcaaat
gttgttatacttcatgacattgactgcaacccatacaacgacaaacaagcggaagacagg
tgccatagagttggtcagactaaagaagtattagttattaaattaataagccaaggaacg
attgaagagtccatgctaaaaattaaccaacaaaagttgaagctagagcaagacatgact
acagtagatgaagctgatgagggaagtatgccagcggatatagccacgctactgaaaacg
tcaatgggcctgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (9)   
   Pfam (9)   
All databases (31)   

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